Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium210g00019 ATGGGCATAATCAGAAGCATGAGATCGCGGTCGCATCGCGTCGTGCAGGAGCAAGAAGAGTGTGTTGGTGACAGCATGAGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTTCTCCTACGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGGAAGAGTGTTGTCGCCTGCGCCGGCGTTTGCCGCAGCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAGCTTTCCTCAAAAATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTCCGGTGCTTTATAAAGCGCAACCGGTCAACCCAAACATACTATTTGTTTCTCAGTTTAACCAATACACTAGCCGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAGTGCAGACGTCCGACATGCACAGACTATATCATCTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGACAGCCAGCCACCTCACTCAGGGGCAAGGATTATGAAAAGTCGCTCCACTAGGCTGGTGAATCTAAAACAAGTTTCGCCGAAGGTCCCTACAGGCAATTATCCAGTGGCTCACATCTCATATGAATTGAATGTGCTAGGCTCCCGCAGGGGGCCTAGGAGAATGCATTGTGTTATGGATTCCATTCCTGCCACTGCAATTGAAGCTGGAGGAGTAGCTCCTACACAGACCGAGTTTTCTCTTAACAACATAGATATGTTTCCTTCATTCCCTTTTTTCCGATCAAAATCAAATCGTGTAGAAAACACCATGTCTGGACCCCTGGTTGATCAGAAGGATGGGATGCTCGTGTTAAAAAACAAGTCTCCTAGGTGGCATGAGCAGCTCCAGTGTTGGTGCTTAAACTTTCATGGCCGGGTGACAATTGCCTCGGTTAAAAACTTTCAGCTAGTAGCTTCTGCAGAAAATGGACCTGCTGGACCAGAGCATGATAAGATTATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGATACCCTATTTCGGCCTTTCAGGCCTTTGCGATGTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1155 0.4762 MGIIRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTNTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQPPHSGARIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRRGPRRMHCVMDSIPATAIEAGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRVENTMSGPLVDQKDGMLVLKNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAMCLSSFDTKIACE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium210g00019 384 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Vium210g00019 384 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Vium210g00019 384 PRINTS Tubby superfamily signature 341 360 IPR000007 -
Vium210g00019 384 PRINTS Tubby superfamily signature 362 384 IPR000007 -
Vium210g00019 384 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Vium210g00019 384 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Vium210g00019 384 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Vium210g00019 384 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Vium210g00019 384 Pfam Tub family 92 379 IPR000007 -
Vium210g00019 384 SUPERFAMILY Tubby C-terminal domain-like 80 384 IPR025659 -
Vium210g00019 384 CDD F-box_AtTLP-like 31 75 - -
Vium210g00019 384 FunFam Tubby-like F-box protein 88 384 - -
Vium210g00019 384 Gene3D - 24 84 - -
Vium210g00019 384 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
Vium210g00019 384 PANTHER TUBBY-RELATED 16 382 - -
Vium210g00019 384 Gene3D Tubby Protein; Chain A 91 378 IPR025659 -
Vium210g00019 384 Pfam F-box domain 31 78 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium210g00019 Vium-Chr210 157498 162603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium210g00019 8 384 TUB Transcription Factor Family AT2G47900 72.368 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium210g00019 Tub 3.2e-111 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium210g00019 K19600 - gmx:100778346 743.421