Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium210g00017 ATGGGGTGTGCGTTTGGGAGAGAGTCTTCGAGGGAGGAGAGGAGAGAGGAAGTGAGAGAGGCAAAAGCTGAGGTGAGTAGAGCAGAGGTGGTTGAGAATGAGAACATTGAGAAGGAGAAGGAGAAGGAGGGTGAAAGAGAGGAGAAGAGGACAAGGGCAAGGGGAGAGAGAAGGCGATCTTCGAAGCCGAAGCCGAATCCGAGGTTGAGCAACCCACCTAACCATGTTCATGGTGAGCAGGTTGCAGCAGGGTGGCCCTCCTGGCTCTCTAAGGTTGCTGGTGAAGCCATCAACGGATTGACGCCTCGGAAAGCTGACACCTTTGAGAAGCTTGATAAGATCGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATTCCTTGACGGGAAAAATTGTTGCTCTAAAGAAGGTCCGTTTTGACAATTTAGAGCCTGAAAGTGTGAAGTTCATGGCTAGAGAGATTTTGATTCTCCGTCGTCTAGATCATCCCAATGTCATCAAACTTGAAGGCTTAGTGACTTCTAGAATGTCGTGCAGTTTATATCTTGTATTTGAATACATGGTGCATGATCTGGCTGGACTTGCCACAAACCCGGCAATTAAGTTCACGGAATCTCAGGTAAAATGTTACATTCATCAGCTATTTTCTGGACTGGAGCACTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGATAATGATGGAAATCTTAGGATTGCTGATTTTGGATTAGCTTCCTTTTTTGATCCTCATCACAAGCACCCTATGACTAGTAGAGTGGTTACATTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCTACTGAATATGGTGTCGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACGGAGGTGGAACAACTACACAAGATATTTAAGCTATGCGGTTCTCCTTCTGACGAATATTGGAAGAAATCGAAGTTGCCACATGCTACCATTTTTAAGCCCCAACAGTCATACAAGCGGTGTATTGCAGAGACGTTTAAAGATTTTCCTCCATCATCCCTGCCGCTTATTGACACCCTTCTCTCAATTGATCCAGATGAACGTTTGACTGCCACTGCTGCGTTGCATAGTGAATTCTTTACAACAAAACCATATGCCTGTGATCCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAAAGCTAATGTTGACGGTGTCAAGAAATCTCGTCCACGAGAGCGAGCTGGGCGGGGAATTCCAGTTCCAGAGGCCAATGCTGAACTGCAAGCAAATATTGATAGACGGCGGCTGATCACACATGCAAATGCTAAGAGCAAGAGTGAAAAGTTTCCTCCTCCTCACCAAGATGGAGCTCTAGGCTATCCACTGGGTTCTTCACATCACATGGATCCAGTTTTTGATCCTCCTGATGTTCCATTTAGTTCCACAAACTTCTCACAACCTAAAGCAAACATCCAAACCTGGTCAGGCCCATTGGTAGATCCTGCTAATGGGGGCGCACCAAGGAGAAAGAAGAAACATGGGAAATGA 1641 0.4625 MGCAFGRESSREERREEVREAKAEVSRAEVVENENIEKEKEKEGEREEKRTRARGERRRSSKPKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRKADTFEKLDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTESQVKCYIHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGNLRIADFGLASFFDPHHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQQSYKRCIAETFKDFPPSSLPLIDTLLSIDPDERLTATAALHSEFFTTKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANVDGVKKSRPRERAGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHMDPVFDPPDVPFSSTNFSQPKANIQTWSGPLVDPANGGAPRRKKKHGK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium210g00017 546 MobiDBLite consensus disorder prediction 7 54 - -
Vium210g00017 546 Coils Coil 11 48 - -
Vium210g00017 546 FunFam probable serine/threonine-protein kinase At1g54610 95 190 - -
Vium210g00017 546 ProSiteProfiles Protein kinase domain profile. 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium210g00017 546 MobiDBLite consensus disorder prediction 428 447 - -
Vium210g00017 546 FunFam probable serine/threonine-protein kinase At1g54610 191 432 - -
Vium210g00017 546 PANTHER CELL DIVISION PROTEIN KINASE 106 396 - -
Vium210g00017 546 MobiDBLite consensus disorder prediction 459 481 - -
Vium210g00017 546 MobiDBLite consensus disorder prediction 1 79 - -
Vium210g00017 546 Pfam Protein kinase domain 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium210g00017 546 Gene3D Transferase(Phosphotransferase) domain 1 191 431 - -
Vium210g00017 546 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Vium210g00017 546 MobiDBLite consensus disorder prediction 428 546 - -
Vium210g00017 546 CDD STKc_CDK9_like 108 392 - -
Vium210g00017 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Vium210g00017 546 SMART serkin_6 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium210g00017 546 MobiDBLite consensus disorder prediction 509 528 - -
Vium210g00017 546 Gene3D Phosphorylase Kinase; domain 1 96 190 - -
Vium210g00017 546 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium210g00017 Vium-Chr210 135945 141451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium210g00017 103 430 Core Cell Cycle Gene Families AT5G10270 51.163 1.39e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium210g00017 Pkinase 5.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium210g00017 K08819 - gmx:100779413 945.651