Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium210g00011 ATGGAACGTTCTGTCATCGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTACAGAAGAAGATGCAGGATTCGAGCTCCATGTTGCAATGAGCTCTACTCTTGCCGTCATTGTCATAACGAGGCAACGGTTGCCCAAGTTTGTACAAACTGCGGTGTCAGAATGGGAGAATATTTTTGCAGCATCTGCAAATTCTTCGATGATGAGACCGGGAAAGAACATTTTCATTGTGATGATTGTGGGATATGCAGAGTTGGTGGTCGTGAGAATTTTTTCCACTGCAAAAAGTGTGGGTCTTGCTATTCAAATGGTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGCTATGAGTACCTTTTTGACTCATTGAAAGACACTGCTGTTATGAAATGTGGTCACACGATGCATTCTGAATGTTACCACGAGATGATAAAGCGTGACCAGTATTGTTGTCCCATATGCTCCAAGTCGGTAATTGACATGTCTAGGACATGGAAGAGAATTGACGAAGAGATTGAAGCAACTGTCATGCCTGAGGACTATCAGAACAGAAAGGTTTGGATACTCTGTAATGACTGCAATGATACAACTGAAGTTTACTTCCACATTATTGGGCATAAATGTGGTCACTGCAACTCATACAATACTCGTGCAATAGCTCCTCCTGTTCTTCCTCAATGA 714 0.4258 MERSVIERLDFGKMGYGCKHYRRRCRIRAPCCNELYSCRHCHNEATVAQVCTNCGVRMGEYFCSICKFFDDETGKEHFHCDDCGICRVGGRENFFHCKKCGSCYSNGLRDNHLCVENSMRHHCPICYEYLFDSLKDTAVMKCGHTMHSECYHEMIKRDQYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYQNRKVWILCNDCNDTTEVYFHIIGHKCGHCNSYNTRAIAPPVLPQ 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium210g00011 237 Gene3D - 197 232 - -
Vium210g00011 237 SUPERFAMILY Zinc hairpin stack 59 116 IPR037275 -
Vium210g00011 237 Pfam Zinc-ribbon 170 228 IPR039512 -
Vium210g00011 237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 45 - -
Vium210g00011 237 ProSiteProfiles Zinc finger RING-type profile. 123 166 IPR001841 -
Vium210g00011 237 Pfam Zinc finger, C3HC4 type (RING finger) 123 165 IPR018957 GO:0046872
Vium210g00011 237 SUPERFAMILY RING/U-box 122 172 - -
Vium210g00011 237 SMART ring_2 123 165 IPR001841 -
Vium210g00011 237 Pfam CHY zinc finger 18 46 IPR008913 GO:0008270
Vium210g00011 237 ProSiteProfiles Zinc finger CHY-type profile. 11 85 IPR008913 GO:0008270
Vium210g00011 237 ProSiteProfiles Zinc finger CTCHY-type profile. 58 122 IPR017921 -
Vium210g00011 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 196 IPR013083 -
Vium210g00011 237 FunFam RING finger and CHY zinc finger domain-containing protein 1 194 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium210g00011 Vium-Chr210 91534 94959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium210g00011 10 236 C2H2 Transcription Factor Family AT3G18290 40.157 1.03e-51 178