Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium210g00008 ATGGCGAGACCTTCCAAGCCCCACTCATCTTCGGACGAAGCACTCTCCAATGCTTCGAGTTCATCCGAGGAAAAGGAGCTGGTCAACGAGCAGATCAACGAAGAGGAAGATGAGGAGGAGCTTGAGGCGGTGGCCCGCTCTGCCCGCTCTGCCAGTTCTGACGACGATGACGATGAAGGTGCCGCTGGTAATCCTCCGGATTCTGACGAAGATCCAGCTGGGGATGATGACCAGGATGAGGATAATGTTGATCCGGCAATTAGCAAGCGAGAGAAGACTAGATTAAAGGAAATGCAGAAAATGAAGAAACAGAAAATCCAGGAGATACTGGATGCACAAAATGCGGCCATAGATGCTGACATGAATAATAGAGGAAAGGGGCGGCTGAAGTATCTTTTGCAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGTGATCAAAGTTCTTCTCAAAAGTCAAGGGGAAGGGGTCGCCATGCATCGAAAGTCACTGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGATGGTGTAGCCAGCACACGTCTGGTGACGCAACCATCATGCATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGGATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACCATATCTTTGTTGGGTTATTTGCATGAGTTCAGAGGAATAAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGTCCTGTTCTACGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGAGACATATAAAAGAGGAACTTCTGGTTGCTGGCAAGTTTGATGTCTGTGTTACCAGTTTTGAAATGGCAATCAAGGAGAAGTCTGTGTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAAAATTCCTTACTGTCAAAAACAATGAGACTGTACAGTACAAACTATCGCCTACTTATTACTGGCACACCACTTCAGAATAATCTTCACGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTAGTTCAACAATTACACAAGGTCCTTAGGCCATTTCTCCTTCGAAGGTTGAAATCAGATGTTGAGAAAGGGCTGCCACCGAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAGATGCAGAAACAGTATTATAGAGCATTACTTCAGAAGGATCTTGAAGTTGTAAATGCTGGTGGTGAAAGGAAACGCCTCCTGAATATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGACAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTAGGGTCCTTATATTTTCTCAGATGACGAGGCTTCTAGACATTCTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGACGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCCTGTTATCTACTCGTGCTGGAGGTCTTGGAATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGACAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAGGAAGTTCAAGTTTTTCGCTTTTGTACCGAGTATACAATTGAAGAAAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAGCAAGGGAGATTAGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGACGCCATCAAATTTAAGATGGATGACACTGCGGAGCTATATGATTTTGATGATGAGAAGGACGAGAACAGATTTGATATTAAAAAAATTGTTAGTGAGAACTGGATTGAACCACCGAAAAGGGAGCGGAAGCGAAACTACTCAGAGTCTGAGTACTTTAAGCAAACAATGCGTCAAGGTGGTCCTACTAAACCAAAAGAGCCTCGTATTCCTAGGATGCCCCAGTTGCATGATTTTCAGTTTTTCAACACGCAGAGGTTGAGTGAGCTGTACGAAAAGGAAGTTCGCTATCTCATGCAAGCACACCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCGTTGACTGCTGAAGAGTTGGAGGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCCTGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCTTGCGAAAAATATGGCAGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCGAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAAAAGTTGGACCGGTACAAGAATCCTTGGCTTGAGTTAAAGATACAATATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAGCTAAAGGCAGCTTTTCGAACTTCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAATTGGCAAGAAGGTGTGACACTCTCATTCGTCTAGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAAACATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGATAGTCCGTCTTTGAAGAAGCGGAAACAGTTAACAATGGATGATTACGCAAGCACGGGGAAGAGAAGAAAATAA 3213 0.4195 MARPSKPHSSSDEALSNASSSSEEKELVNEQINEEEDEEELEAVARSARSASSDDDDDEGAAGNPPDSDEDPAGDDDQDEDNVDPAISKREKTRLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKSRGRGRHASKVTEEEEDEEYLKEEEDGVASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIKEELLVAGKFDVCVTSFEMAIKEKSVLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNMTPSKRALARQTDSPSLKKRKQLTMDDYASTGKRRK 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium210g00008 1070 SUPERFAMILY Homeodomain-like 902 1024 IPR009057 -
Vium210g00008 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 417 709 - -
Vium210g00008 1070 Pfam HAND 760 842 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vium210g00008 1070 FunFam Chromatin-remodeling complex ATPase 197 412 - -
Vium210g00008 1070 Coils Coil 95 115 - -
Vium210g00008 1070 Gene3D - 197 412 IPR038718 -
Vium210g00008 1070 Gene3D - 935 1038 - -
Vium210g00008 1070 Gene3D - 417 709 IPR027417 -
Vium210g00008 1070 MobiDBLite consensus disorder prediction 1019 1035 - -
Vium210g00008 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 847 901 - -
Vium210g00008 1070 Pfam SLIDE 904 1014 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vium210g00008 1070 CDD SANT 850 894 IPR001005 -
Vium210g00008 1070 MobiDBLite consensus disorder prediction 9 26 - -
Vium210g00008 1070 CDD DEXHc_SMARCA1_SMARCA5 193 413 IPR044754 GO:0005524
Vium210g00008 1070 SMART ultradead3 192 384 IPR014001 -
Vium210g00008 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 748 846 - -
Vium210g00008 1070 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 373 IPR014001 -
Vium210g00008 1070 MobiDBLite consensus disorder prediction 1019 1070 - -
Vium210g00008 1070 Coils Coil 1004 1035 - -
Vium210g00008 1070 Gene3D iswi atpase 902 934 - -
Vium210g00008 1070 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 92 1056 - -
Vium210g00008 1070 Gene3D ISWI, HAND domain 748 846 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vium210g00008 1070 FunFam ISWI chromatin-remodeling complex ATPase CHR11 935 1038 - -
Vium210g00008 1070 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 759 849 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vium210g00008 1070 Coils Coil 18 42 - -
Vium210g00008 1070 Pfam SNF2-related domain 209 476 IPR000330 GO:0005524|GO:0140658
Vium210g00008 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 411 IPR027417 -
Vium210g00008 1070 SMART sant 847 896 IPR001005 -
Vium210g00008 1070 SMART sant 949 1010 IPR001005 -
Vium210g00008 1070 MobiDBLite consensus disorder prediction 83 100 - -
Vium210g00008 1070 MobiDBLite consensus disorder prediction 42 56 - -
Vium210g00008 1070 ProSiteProfiles SANT domain profile. 846 898 IPR017884 -
Vium210g00008 1070 Pfam Helicase conserved C-terminal domain 499 611 IPR001650 -
Vium210g00008 1070 Gene3D - 847 901 - -
Vium210g00008 1070 MobiDBLite consensus disorder prediction 143 176 - -
Vium210g00008 1070 MobiDBLite consensus disorder prediction 1 100 - -
Vium210g00008 1070 CDD SF2_C_SNF 497 622 - -
Vium210g00008 1070 SMART helicmild6 527 611 IPR001650 -
Vium210g00008 1070 MobiDBLite consensus disorder prediction 57 82 - -
Vium210g00008 1070 MobiDBLite consensus disorder prediction 1046 1070 - -
Vium210g00008 1070 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 652 IPR001650 -
Vium210g00008 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 694 IPR027417 -
Vium210g00008 1070 SUPERFAMILY Homeodomain-like 850 900 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium210g00008 Vium-Chr210 69458 80935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium210g00008 217 638 RAD5 or RAD16-like Gene Family AT1G02670 27.129 2.51e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium210g00008 SNF2_N 6.2e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium210g00008 K11654 - gmx:100782649 1932.53