Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium210g00007 ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACAGTGGTGGGGTGAGGGTCAAGGAGGTGCCCAACAAGGATTCTTCTTTTAAGGAAGCTGCTTCTCTTGTTCCTCAGTCTCATCACCCCAGCAGGGCAAACACAGATAAATCGAAATCATCACGAAGTGGCGCAGATGCTAAGAAGGAAGCACCGGTTCCAAAGGATGGCCCAACAGCCCATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAATGTTTACTAGGCGAAGGGGGTTTTGGACGTGTTTACAAAGGTCGTCTCGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTAGACCGAAATGGTCTCCAAGGAAATCGAGAATTTTTGGTGGAAGTTCTCATGCTCAGTCTCTTACATCATCCCAATCTTGTGAACTTAATTGGTTATTGTGCAGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCACTGGGGTCTTTGGAGGATCATTTACACGATCTTCCTCCTGACAAGGAGCCTCTGGACTGGAACACTAGGATGAAGATAGCAGCTGGAGCTGCAAAGGGATTGGAATATTTGCATGACAAGGCAAATCCGCCAGTGATATATAGAGACTTAAAATCATCCAACATCCTCCTAGACGAGGGTTACCATCCCAAGTTGTCGGATTTTGGGCTGGCAAAACTTGGTCCGGTCGGCGACAAGACTCATGTATCAACACGAGTAATGGGAACATACGGCTACTGTGCTCCGGAATATGCCATGACCGGTCAACTAACTCTGAAATCTGATGTCTACAGTTTTGGAGTTGTGTTCCTTGAACTTATTACTGGGCGCAAGGCTATTGACAATACACGTGCGCATGGAGAGCACAATCTTGTTGCATGGGCACGGCCTCTCTTCAAGGACCGTCGGAAATTCCCGAAAATGGCTGACCCTCTACTTCAAGGCCGTTACCCGATGCGAGGACTGTATCAAGCACTTGCAGTTGCTGCAATGTGTCTGCAGGAGCAAGCTGCTACAAGGCCTCTGATTGGGGATGTGGTGACTGCTCTCACATATCTGGCCTCACAGACATATGATCCAAATGCAGCCAACCAATCCAACAGGGTTGGGCCCTCAACACCTAGGATGAGGGATGACAGAAGGAGCCTGGCCGACGGTGTGGACAGCCCTGACCGGCGCCTCGGCTCCCCTTCCACGCACCGAAACTCCCCAGACTTCAGGAAGAGAGACAGCAGGGATGCAAGCATTGGGACAGAGTTAGGCAGCAGGATGGACACGGGTGGTGGCTCAGGGAGGAAATGGGGATTGGATGATTATGAAAGGCAGGAGTCTCAGAGAGACAGCCCTGTAAATACTGCAAGAGCCAGAGAGACTCCATGGAACCGCGACCTGGACCGAGAGCGTGCGGTGGCCGAAGCAAAAGTCTGGGGCGAGAATTGGAGAGAGAAGAAGAAAGCAAATGCCATGGGTAGCTTCGATGCTACAAATGACTGA 1545 0.4997 MGGCFPCFGSSNKEDSGGVRVKEVPNKDSSFKEAASLVPQSHHPSRANTDKSKSSRSGADAKKEAPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAANQSNRVGPSTPRMRDDRRSLADGVDSPDRRLGSPSTHRNSPDFRKRDSRDASIGTELGSRMDTGGGSGRKWGLDDYERQESQRDSPVNTARARETPWNRDLDRERAVAEAKVWGENWREKKKANAMGSFDATND 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium210g00007 514 SMART serkin_6 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium210g00007 514 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Vium210g00007 514 FunFam Serine/threonine-protein kinase PBS1 66 169 - -
Vium210g00007 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Vium210g00007 514 Pfam Protein kinase domain 98 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium210g00007 514 Gene3D Transferase(Phosphotransferase) domain 1 170 387 - -
Vium210g00007 514 PANTHER OS07G0668900 PROTEIN 35 379 - -
Vium210g00007 514 MobiDBLite consensus disorder prediction 377 476 - -
Vium210g00007 514 Gene3D Phosphorylase Kinase; domain 1 66 169 - -
Vium210g00007 514 MobiDBLite consensus disorder prediction 1 74 - -
Vium210g00007 514 FunFam Serine/threonine-protein kinase PBS1 170 385 - -
Vium210g00007 514 MobiDBLite consensus disorder prediction 419 433 - -
Vium210g00007 514 CDD STKc_IRAK 99 368 - -
Vium210g00007 514 MobiDBLite consensus disorder prediction 46 69 - -
Vium210g00007 514 SUPERFAMILY Protein kinase-like (PK-like) 75 367 IPR011009 -
Vium210g00007 514 ProSiteProfiles Protein kinase domain profile. 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium210g00007 514 MobiDBLite consensus disorder prediction 390 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium210g00007 Vium-Chr210 61445 67995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium210g00007 4 372 Glycoside Hydrolase AT3G07070 64.960 1.10e-171 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium210g00007 Pkinase 5.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium210g00007 - - gmx:100814575 998.423