Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2109g00002 ATGGTTTTTGGATTGGTGAACAAAGGTGTTCCTTGGACGGAGGAAGAGCACAGACTGTTCCTGTTAGGGTTGCACAAAGTTGGAAAGGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAAACTCGCACGCCAACTCAGGTCGCCAGTCACGCTCAGAAGTACTTCCTCCGTCGCCACAACCAGAACCGCCGCCGCCGGAGATCTAGCCTCTTTGACATCACTACCGATACGGTGATGGAGTCTTCTACTATAATGGAAGAAGAACAAGTTCAGCAGGAAACGGCGGCGCTGACTATCCCCGCAGCATATCCGCCGTCGCATTACGGCGGTTTCCCTGGCGCAGGTTTTCCGATGAGTCTATCTCCAGTGGTTTTACCGGCGAGCAGTGAGAGGCTAGCCAAGCCGATTAGGCCGACGCCGATTTTGCCGGTCCCACCGTCGTCGAAGATGGCTAGTTTGAACTTGAAAGAGAAAGCTTCTCCGACTAATCTCATAGAGCCTTTACCGTTGTCGTTGAATCTGCCATCGCCGACGCCGCGGTCACAGGATCAGTCACCGGCGAGTAGTGACCACTCATCGCCGTCGTCGTCATCATCGGCTTTTCAGGCGATTTCTGCTGGGAAGTTCGGCGGCGGTGGGGACAGTATCATCAGCGTTGCTTGA 666 0.5375 MVFGLVNKGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVQQETAALTIPAAYPPSHYGGFPGAGFPMSLSPVVLPASSERLAKPIRPTPILPVPPSSKMASLNLKEKASPTNLIEPLPLSLNLPSPTPRSQDQSPASSDHSSPSSSSSAFQAISAGKFGGGGDSIISVA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2109g00002 221 MobiDBLite consensus disorder prediction 161 221 - -
Vium2109g00002 221 PANTHER TRANSCRIPTION FACTOR KUA1 8 169 - -
Vium2109g00002 221 ProSiteProfiles Myb-like domain profile. 11 56 IPR001005 -
Vium2109g00002 221 CDD SANT 11 56 IPR001005 -
Vium2109g00002 221 Pfam Myb-like DNA-binding domain 11 56 IPR001005 -
Vium2109g00002 221 NCBIfam myb-like DNA-binding domain, SHAQKYF class 7 58 IPR006447 GO:0003677
Vium2109g00002 221 Gene3D - 10 61 - -
Vium2109g00002 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vium2109g00002 221 SMART sant 8 58 IPR001005 -
Vium2109g00002 221 SUPERFAMILY Homeodomain-like 7 59 IPR009057 -
Vium2109g00002 221 MobiDBLite consensus disorder prediction 176 205 - -
Vium2109g00002 221 ProSiteProfiles SANT domain profile. 12 60 IPR017884 -
Vium2109g00002 221 FunFam transcription factor MYB1R1 10 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2109g00002 Vium-Chr2109 12706 14873 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium2109g00002 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2109g00002 - - vum:124829174 367.851