Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2109g00001 ATGTCTCGCACGTGCTCACAGTGCGGGAACAACGGCCACAACTCAAGGACATGCACCGACGGTGGTGCTGCTGTTTCCGGGGGCTCGTCTCCCCGGGAGAGCGGCTTCATGCTGTTTGGCGTGCGAGTCACCGAAGGAATTTCCTCCTTCAGGAAGAGCGCTAGCATGAACAACCTCTCTCAATATGACGCCGATTCCAACACAGCCGACGCCGGGTACGCCTCCGACGACGTCGTTCACGCCTCCGGTCGCGCGCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAGCACAGACTGTTCCTGTTAGGGTTGCACAAAGTTGGAAAGGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAAACTCGCACGCCAACTCAGGTCGCCAGTCACGCTCAGAAGTACTTCCTCCGTCGCCACAACCAGAACCGCCGCCGCCGGAGATCTAGCCTCTTTGACATCACTACCGATACGGTGATGGAGTCTTCTACTATAATGGAAGAAGAACAAGTTCAGCAGGAAACGGCGGCGCTGACTATCCCCGCAGCATATCCGCCGTCGCATTACGGCGGTTTCCCTGGCGCAGGTTTTCCGATGAGTCTATCTCCAGTGGTTTTACCGGCGAGCAGTGAGAGGCTAGCCAAGCCGATTAGGCCGACGCCGATTTTGCCGGTCCCACCGTCGTCGAAGATGGCTAGTTTGAACTTGAAAGAGAAAGCTTCTCCGACTAATCTCATAGAGCCTTTACCGTTGTCGTTGAATCTGCCATCGCCGACGCCGCGGTCACAGGATCAGTCACCGGCGAGTAGTGACCACTCATCGCCGTCGTCGTCATCATCGGCTTTTCAGGCGATTTCTGCTGGGAAGTTCGGCGGCGGTGGGGACAGTATCATCAGCGTTGCTTGA 912 0.5669 MSRTCSQCGNNGHNSRTCTDGGAAVSGGSSPRESGFMLFGVRVTEGISSFRKSASMNNLSQYDADSNTADAGYASDDVVHASGRARERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVQQETAALTIPAAYPPSHYGGFPGAGFPMSLSPVVLPASSERLAKPIRPTPILPVPPSSKMASLNLKEKASPTNLIEPLPLSLNLPSPTPRSQDQSPASSDHSSPSSSSSAFQAISAGKFGGGGDSIISVA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2109g00001 303 SMART sant 90 140 IPR001005 -
Vium2109g00001 303 CDD SANT 93 138 IPR001005 -
Vium2109g00001 303 FunFam transcription factor MYB1R1 92 143 - -
Vium2109g00001 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Vium2109g00001 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Vium2109g00001 303 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Vium2109g00001 303 MobiDBLite consensus disorder prediction 258 287 - -
Vium2109g00001 303 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Vium2109g00001 303 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Vium2109g00001 303 MobiDBLite consensus disorder prediction 1 24 - -
Vium2109g00001 303 Gene3D - 92 143 - -
Vium2109g00001 303 MobiDBLite consensus disorder prediction 243 303 - -
Vium2109g00001 303 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
Vium2109g00001 303 PANTHER TRANSCRIPTION FACTOR KUA1 1 247 - -
Vium2109g00001 303 MobiDBLite consensus disorder prediction 1 30 - -
Vium2109g00001 303 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2109g00001 Vium-Chr2109 9450 11084 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium2109g00001 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2109g00001 - - var:108322503 496.508