Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2107g00027 ATGGCGTCGGAGAGCACAGTGACTTCAAACTCTACCGACGGTGAACGACCGAAGGTGGTTGTCATAATGGGACCCACAGCTTCCGGGAAGTCGAAGCTTGCCGTTGATTTAGCCTCTCAATTCCCCATAGAAGTCATCAACGCTGATTCCATGCAGGTCTACCGCGGCCTTGATGTTCTCGCCAACAAACTCCCTCTCTCTCACCAAAACGGAGTGACGCATCATCTCTTGGGAACTGTAAGCCCCAACGAAGAATTCACGGCTAAAGCGTTTCGGGATTCCGCTATTCCCATTATTGATGACATAGTGGCTCGCAATCATTTGCCTGTTATAGTTGGGGGTACAAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTCTAGATGATTCTGCCGAAGATATGGATGAAAGCTGTGTGGGTGACCCACCTGGCATCACGCAGTCTGAGAACAGTTTCCCTGCTGAAAATGATGGTTCAAGCTATGGTTATGATCTGCTCAAGGATATTGATCCAGTTGCTGCTAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATATATTAATTTGTACACTCGCACGGGTGTTCTTCCTAGTAAAGTTTTTCAAGGAAAGGCAGCAGAGAATTGGGGTCAAGTTGACAACTTAAGATATGATTGTTGTTTTATATGTGTGGATGCATCTCTCCCTGTACTGGACAGATATGTAGAGCAGAGGGTAGATTGCATGATGGACGATGGATTACTCAATGAAGTCTATGACATTTATAATTTGAATGCAGATTATACTAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTCGAGCCTCTTCTTAGAACTTGTGTTGTCAAAGACATGTATGAAAGAGAGAGGGAACTGACTGAAGGATCCAGGGTAGAAAAGGGCAAGACCTTGTTTAATGGTAATTTGATGGAGTTGGTGAGATCTTCCAATGATACTGAATCCATAACTCTTTTGGAAGAAGCATTTGAAAAAGTAAAGGTTAATACCAGGAGACTTGTTCGCCGACAGAAGAGGATGCTCAGTCGACTGCAAACATTGTTTGGTTGGAACATATACTACGTTGATTCCACAGAAGCAATATCGAGCAAATCAGAAAATGCATGGGCACGCCAAGTAGTTGAACCTGCTGTGAAGATAGTTAAATCTTTCTTGAGTGAGAATGGAAGCTTGTCATCCACCTTTGGGGCTTCAAATGACACAGGGATGAAAATAATGCAAAGGGACCTCTGGACACAATACGTATGCAAGGCGTGTGGAGATCGCGTTCTTAGAGGATTACATGAATGGGAACAACACAGACAAGGTCGTGGGCACCGAAAACGTATTTCAAGTCTTAAGAGCAAGGGCCAATTTCCTGGTTTCGTGGAACAGAAGGTTGAGTATTCTCAGTGTGAACAGTGA 1434 0.4386 MASESTVTSNSTDGERPKVVVIMGPTASGKSKLAVDLASQFPIEVINADSMQVYRGLDVLANKLPLSHQNGVTHHLLGTVSPNEEFTAKAFRDSAIPIIDDIVARNHLPVIVGGTNYYIQALVSPFLLDDSAEDMDESCVGDPPGITQSENSFPAENDGSSYGYDLLKDIDPVAANRIHPNNHRKINQYINLYTRTGVLPSKVFQGKAAENWGQVDNLRYDCCFICVDASLPVLDRYVEQRVDCMMDDGLLNEVYDIYNLNADYTRGLRQAIGVREFEPLLRTCVVKDMYERERELTEGSRVEKGKTLFNGNLMELVRSSNDTESITLLEEAFEKVKVNTRRLVRRQKRMLSRLQTLFGWNIYYVDSTEAISSKSENAWARQVVEPAVKIVKSFLSENGSLSSTFGASNDTGMKIMQRDLWTQYVCKACGDRVLRGLHEWEQHRQGRGHRKRISSLKSKGQFPGFVEQKVEYSQCEQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2107g00027 477 FunFam LD10347p 151 208 - -
Vium2107g00027 477 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 19 292 IPR018022 GO:0008033
Vium2107g00027 477 Hamap tRNA dimethylallyltransferase [miaA]. 19 372 IPR018022 GO:0008033
Vium2107g00027 477 Gene3D - 145 207 - -
Vium2107g00027 477 Pfam IPP transferase 52 349 - -
Vium2107g00027 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 261 IPR027417 -
Vium2107g00027 477 FunFam tRNA dimethylallyltransferase 419 462 - -
Vium2107g00027 477 Gene3D Classic Zinc Finger 420 465 - -
Vium2107g00027 477 Gene3D - 17 419 IPR027417 -
Vium2107g00027 477 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 395 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2107g00027 Vium-Chr2107 314521 321458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2107g00027 22 471 C2H2 Transcription Factor Family AT2G27760 56.071 1.85e-175 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2107g00027 K00791 - gmx:100792690 804.283