Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2107g00024 ATGAGCGGGGATGGTCGACGACGTGACCGGAGAGATACCAGAGCACCGAAAAAGCGGAAGCTAAACCGCAACCCCGAGGACGAACTCGAAGCTAAATTAGGGTTCGATCTGTTTTCAGAGGGTGAAAAGCGGCTCGGATGGCTACTCACTCTTGCATCGTCATCTGTTCAGGATGAAAACAGTTACAAAGAATACAGTTGTGTCGATCTTTACTTTGTTACACAGGATGGCTCTTCATTCAAGTCAAAACTCAGATTTCGGCCTTACTTCTATGTAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGAAGACGTTACGAAGGTCAGATTGCTGATATTGAAATTATAGACAAAGAAGACCTGGATCTTAAAAATCATTTATCAGGATTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTACAACAATTGATGGATGTGAAGAGAGACCTGATGCCTTCTGTTGAAAGAAATAAGGCTAAGTCTGATACTGCAGAAGCCTTTGTATCCATGTCAACAGAAAGAAGAGAACATAGACCTCAGGACTTTCTAGATTGCTTGACTGATCTTCGAGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGTCCAATAACGGGGTTAAACTTGAAAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGAGTTTGTGCATTTGACATTGAGACCACAAAACTTCCATTAAAGTTTCCTGATGCTGACTATGATTTAGTTATGATGATTTCATACATGGTAGATGGTCAGGGGTATTTAATCATAAATAGGGAGTGTGTCGGGGATGATATAGAAGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAAGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTGTGGTTCTCTCATATGCAAGAGGTGAAACCTGGTATCTACGTGACGTATAATGGTGATTTTTTTGATTGGCCATTCCTGGAACGAAGGGCAACCCATCTTGGGTTGAAAATGAGTGATGAATTGGGGTTCAAATGCGACACAAACCAAGGGGAATGTCGTGCTAAATATGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGCTTGAAGGCTGTTACAAAAGCAAAGTTGGGATATGATCCAGTGGAGGTGCATCCTGAAGACATGGTTCGATTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATAAAACTTATGTTCATCCCTTTATATTCTCTCTTGCAACCATTATACCTATGCCACCCGACGAGGTTTTGCGCAAAGGTAGTGGAACCCTATGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCCAATGTTATATGCCCTAACAAACACCAGTCTGATCCAGAGAAGTTTTATAATAATCATCTTCTTGAGAGTGAGACATACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTATTCAGATCTGACATCCCATCTAGTTTTACATTAGAGCCATCTGCTTTTCAGCAACTTATCAACAACCTTGATCGAGATCTACAGTATGCTATAACAGTGGAGGGCAAGATGGATTTGGAATCTGTTTCTAATTATGACGAAGTAAGAAATGCAATCATGGAAAAGCTTGTAAAATTACGAGATGTGCCAACACGTGAAGAATGTCCCCTCATTTATCACCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCATCAATTGTTACCGATGAAGTCTGCACTGCATGTGATTTTAATCGTCCTGGAAAGACTTGCCTACGTAAGCTTGAGTGGGTTTGGCGTGGAGAAACATTCATTGCAAAGAAAAGTGACTACTATGCTTTAAAGACACAAATAGAATCAGAGTTTGTTGATGATTCTGAGAACAACAAATCCTTACCCCGCTATTCTGAGAAGAGGTCATCAAAATCCTTTCTTGACCTTCCCAAGTCAGAGCAAATATCAAGATTGAAAGATCGTTTAAAGAAATACTGCCAGAAGGCATATAAGCGGGTACTTGACAAACCTGTTACTGAAATTCGTGAAGCAGGAATCTGCATGCGGGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAATTGTCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAAGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTATTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATAATTCAGAATGCCCGCTTGCTAGTAGAAAAAATAGGAAAACCACTTGAACTAGATACAGATGGTATTTGGTGTGCACTACCTGGATCTTTTCCGGAAAATTTCACTTTTAAAACAAAAGACCCAAAGAAGAAGTTCACAATATCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAATATCAGACACTCACAGATCCAATCAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGGCCATACAAGGCAATGATCCTTCCTGCTTCAAAGGAAGAAGGAATTTTGATTAAGAAGCGATATGCTGTTTTTAATGATGACGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCATCATTAGAAGAATGCTATTCAGCTGTTGCTTCGGTGGCAAACCGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATCGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGTCTAGCTGACTTTCTTGGAGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTTGCAAGTGAACCAAAGGGCACACCAGTTAGTGAGCGTGCTATTCCTGTGGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAAGTTTCATTGGAAGTTGCCATTCGTTCAATAATTGATTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAGATTGTCACTATTCCTGCTGCAATGCAAAAGGTTTCAAACCCTGTCCCTAGGGTAGCTCATCCTGATTGGTTGCACAAAAAAGTTCGGGAGAAGGAGGACAAATTTCGCCAACGGAAAATAGTTGATGCCTTTAAACCAATGAACAAGAACGAGCACTTGAAAAAGCATAATGACTCAAATCGTGTCTCTTTTGAGATGGATGATGAGATTCTTAATGAGTTAGAGGACTTTGGAAACAAGGGTAGGAGTTCTACTTACGGACCTAGACCAATTATAAGGCATTATGAAGCTAATAATGAACAAAATTCAAGGAAGCTCAGTGATCAACAAGATTTAGAGCAAGAGCATAGTAAAGATAATAGCAGCAAGAAAAATCTACTTTCACCACCACAACAAGATGAAACGTATGAAAATATAGACAGAAATGTAGATTATCAGGGATGGCTTCAAGTAAAGAAGCGAATGTGGAAAAATATTCTGGAAAGAAGAAAGAAGCAAAGATTGGAGAAATCAAAGATATCTAATCGCATGAATGGTGTTTCTGAACAAATAAATGGTAAGAGGAATCTAGGAAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACGAAGTGTCATTGGCAGATAATACAATTAGTTCCCAGTTCACTGATAGGCCAATTTGTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCTCCAATTACTGAAGAATTTATGGGTAAACGTGTTAACAAGAATCTTCCTCATGGAAGGCTGAATTATAACTTATATGAGGTCTCAATTAGTGAAATTCAATATGGGGAAGTGAGCAAAAAACTTGCAACTCTTCTAGCGGATCCTGATATTGAGGGAATATATGAAACAAAGGTGCCACTGGAGTTTAATGCATTAATCCAGCTTGGTTGCGTATGTAAGGTGGATAAAACTGCCAATAAACGTAGTCTGCATGAACCATGGAATTTGAGTGAATTGCACATGAAGACTACGACAGAATGTGTTTATCTTGAACAGTCTTTATCCTTCTTTTATTTGTACCACAGCATCTCTGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTATTACCGACTTTTCTTGAACGACAATTTCATGATGCTTGCCAGGCTTTGTCTATTGACCCACCTCCGAGGAATGACATTAATTTTAAGGTGGACTATGTCGCCCATGTCAAGGATGCTGAAACAGTGATGCAAAGAGCAATAAATAGTCACAGTCACGGAAGGGAAAATCATGTGCCTATGGTTGCTGTCATTGAATGCCCTAATGTTCAATTAGTAAAATTGGGCATCCGTGCTCTAGATGATTTTCCATGCCTGAGTGTTCCTTACAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAACTGCTGGTAAAGTTGGAATGCAACGTTGTGCTGCATCAGTCCGATGGTTAAATGAAAGAATTGCTCTCTCAAGATATGCCCATGTACCCCTGGGGAACTTTGAACTTGACTGGCTCATATTTATGGCAGATATCTTCTTTTCAAGGGCGTTGCGTGATAATCAACAGGTGCTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGGATTAATGGCGAACAGAACTTTTTTGTTGATGAGGTCCAACAACCTGTTCTTACATATCCTGGAGCTTATAGAAACGTAACTGTGGAGTTAAAGATACACCACCTGGCTGTAAATGCTCTACTCAAGTACAGCCTAGTTAATGAAATGGAAGGAGGCACTCTATTAGGATTTGGTCACGAACATGATTCTGGAGCATTTTCTATGAATGATCAGAATGGTTTTGATGAGTCTACCTCTTGTGCACATGCCTTTCGAGTCCTTAAGCAGTTGATCCAGCGTTGCCTAGCAGATGCAGTGACATCAGGAAATGTTTATGCTGATTCAATTTTGCAGCATCTGTACAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCAGCTCTCCATCAGCTACTCCACAAGGTCATGCAAAAGGTCTTTGCATTATTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTCACGAAGATTATTATAGACACAGGGAAATATGATTTGTCTAGAGCCAAAGCTTACTGTGACAGTTTGCTAAGAACTATACAATCTAGGGATTTATTTGAATGGATTGAGCTTGAACCATTACAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTACGGTGGAATACCAGTAAAATCTGATGAAGCCATGAATGATAAATCCCAAGTAGACATTATATCAAGCTGGAACATTGCTGAATACTTGCCAAAAAAAGTCCAAGACCATTTTGTTTTCATCGTTTCTCAATTCATGTATATTCCCTGGAATTATGCACAAAACCAAGCACAAATCAGGGCCTCATTTAAGGATGGTGACACCTGCACTCCATCAATAAGCATTGGAGCTGCAGCTGCTTTTGAATCAGAAATAACAGAGTATATCAAAGAACAGATTAGCTCTTACTTTGCGGACAAACTGCTGGGAATTGTTCACGATATTAGTCTTCATATGAAGGGGGTGAGCAGATCAGAAAACAACCAGAGTATATCACCAGGCCCTGAATTACACAGAGGGGATGCTGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCCTGGCTCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTGTTGAGAAAGAATTTGCTAAAATATGTTGGTGTTAGAGAGTTTGCTCCCGAAGCCGAGTTTCATGATCCTTGTCATTCATTCGTCTTATCCAACGTCATATGCAGCTATTGTAATGACTGCAGAGATTTGGACTTGTGCCGGGATTTGGCTTTATTAACTGAGGAGTGGCGTTGTGCTGTGCCACAGTGTGGGCAGCCTTATGACCGTGAGGTGATGGAAAATGCTCTTCTTCAGACTGTAAGACAAAGAGAACGACTATACCACCTGCAAGATGTGGTGTGTATCAAGTGCCATCAGGTGAAAGCTGCGCATTTGGCAGAACAATGCGCATGTGCAGGCTCGTTTAGTTGCAAGGAAGATGCAAATGAATTTCGTAGAAAGATGCAGGTTTTCTTTAACATAGCATCTCGTCAGAAATTCCAGCTTCTCCTAGAGTGTACCTCTTGGATTTTAGAACTTAGATAA 6660 0.4011 MSGDGRRRDRRDTRAPKKRKLNRNPEDELEAKLGFDLFSEGEKRLGWLLTLASSSVQDENSYKEYSCVDLYFVTQDGSSFKSKLRFRPYFYVATKDKMEMDVEAYLRRRYEGQIADIEIIDKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPSVERNKAKSDTAEAFVSMSTERREHRPQDFLDCLTDLREYDVPYHVRFAIDNDIRCGQWYDVGVSNNGVKLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLVMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHLGLKMSDELGFKCDTNQGECRAKYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPVEVHPEDMVRFAKEKPQMMASYSVSDAVATYYLYKTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAFQQLINNLDRDLQYAITVEGKMDLESVSNYDEVRNAIMEKLVKLRDVPTREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFIAKKSDYYALKTQIESEFVDDSENNKSLPRYSEKRSSKSFLDLPKSEQISRLKDRLKKYCQKAYKRVLDKPVTEIREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDPKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSSLEECYSAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETDAEVMKFYVRKWCKVSLEVAIRSIIDWSYYKQRLSSAIQKIVTIPAAMQKVSNPVPRVAHPDWLHKKVREKEDKFRQRKIVDAFKPMNKNEHLKKHNDSNRVSFEMDDEILNELEDFGNKGRSSTYGPRPIIRHYEANNEQNSRKLSDQQDLEQEHSKDNSSKKNLLSPPQQDETYENIDRNVDYQGWLQVKKRMWKNILERRKKQRLEKSKISNRMNGVSEQINGKRNLGRSHVSSYLKRLEVDLTKCHWQIIQLVPSSLIGQFVAWVVVDGSMHKIPVSVPRVFYLNSRSPITEEFMGKRVNKNLPHGRLNYNLYEVSISEIQYGEVSKKLATLLADPDIEGIYETKVPLEFNALIQLGCVCKVDKTANKRSLHEPWNLSELHMKTTTECVYLEQSLSFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLLPTFLERQFHDACQALSIDPPPRNDINFKVDYVAHVKDAETVMQRAINSHSHGRENHVPMVAVIECPNVQLVKLGIRALDDFPCLSVPYNARDSQYQILGWQQTAGKVGMQRCAASVRWLNERIALSRYAHVPLGNFELDWLIFMADIFFSRALRDNQQVLWISDDGLPDLGGINGEQNFFVDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYSLVNEMEGGTLLGFGHEHDSGAFSMNDQNGFDESTSCAHAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFTKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPVKSDEAMNDKSQVDIISSWNIAEYLPKKVQDHFVFIVSQFMYIPWNYAQNQAQIRASFKDGDTCTPSISIGAAAAFESEITEYIKEQISSYFADKLLGIVHDISLHMKGVSRSENNQSISPGPELHRGDAALEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVGVREFAPEAEFHDPCHSFVLSNVICSYCNDCRDLDLCRDLALLTEEWRCAVPQCGQPYDREVMENALLQTVRQRERLYHLQDVVCIKCHQVKAAHLAEQCACAGSFSCKEDANEFRRKMQVFFNIASRQKFQLLLECTSWILELR 2219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2107g00024 2219 SMART DUF1744_2 1524 1910 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vium2107g00024 2219 SMART polmehr3 239 852 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vium2107g00024 2219 CDD DNA_polB_epsilon_exo 240 444 - -
Vium2107g00024 2219 Gene3D Palm domain of DNA polymerase 761 947 IPR023211 -
Vium2107g00024 2219 MobiDBLite consensus disorder prediction 1218 1261 - -
Vium2107g00024 2219 Pfam DNA polymerase family B 763 1083 IPR006134 GO:0000166|GO:0003677
Vium2107g00024 2219 Pfam Domain of unknown function (DUF1744) 1542 1910 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vium2107g00024 2219 Gene3D DNA Polymerase, chain B, domain 1 50 232 - -
Vium2107g00024 2219 SUPERFAMILY Ribonuclease H-like 63 490 IPR012337 -
Vium2107g00024 2219 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Vium2107g00024 2219 MobiDBLite consensus disorder prediction 1220 1244 - -
Vium2107g00024 2219 SUPERFAMILY DNA/RNA polymerases 469 1158 IPR043502 -
Vium2107g00024 2219 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Vium2107g00024 2219 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 17 2217 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Vium2107g00024 2219 CDD POLBc_epsilon 503 1132 - -
Vium2107g00024 2219 FunFam DNA polymerase epsilon catalytic subunit 951 1135 - -
Vium2107g00024 2219 FunFam DNA polymerase epsilon catalytic subunit 762 947 - -
Vium2107g00024 2219 Gene3D - 951 1135 IPR042087 -
Vium2107g00024 2219 MobiDBLite consensus disorder prediction 1 25 - -
Vium2107g00024 2219 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
Vium2107g00024 2219 Gene3D - 238 468 IPR036397 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2107g00024 5 2216 Core DNA Replication Machinery Family AT2G27120 66.561 0.0 2996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2107g00024 K02324 - gmx:100812003 4036.88