Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2107g00010 ATGATTAACAATGGAGTCTGCACTCTCCGCACCTGCTTCCCTTTTCCGGGGAGGTCGCTATTCCCACCATTGCAGCGCTCGTTCACTTTCCGGCGGCGGTTTCTGGTGACTGCATCCCAAAGGAAGAAGAAAGAGAAGGTTATTGTCATTTCTGGACCCACCGGTTCGGGCAAGAGCCGCCTCGCATTGGAACTCGCTAAGAGCCTCAACGGCGAAATCGTCAGTGCAGACTCTGTCCAGGTATATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAGATGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGCTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAATCTTTTTCAGTGATTACATCTGAAGTAAATCAAGAATTAGCTGAACTACAGAGGAATGAAGACTGGGATACAGCTGTACAGTTGGTGGTAAAAGCAGGAGACCCAAAGGCTCAATTTCTAGCAGTGAATGATTGGTATCGACTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCATTTCGGGTACCATATGATTCTTTCAGGGAACAGGGTGAATGTAGTGTTGCTGATGATTCTGAGATATCTGATATGAACACGTACGGTGATGGAATGGAAGAAACCAGCTCATCAGAGTTAGACTATGAGTTTATCTCATCAGAGTTAGACTATGAGTTTATGTGCTTTTTCCTTTCTAGTCATAGACTTGACCTCTATAGATCAATTGATTATCGGTGTGAAGATATGCTTTTAGGAAGGGATGGGATTTTGTCCGAGGCTCAGTGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGTCAGAGTTCTGCTGCAGAGTTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGTAATGAAAAGATATACCAGTGGCTTGATGGTTCTAAACCTCTGGAGACCATTCTCAGTTTCATTAATGGCGCATACCATGACTGGAATGGAAGTCTTCCTGTGCCTGAACACTTAAGAATGTCGAGAGATATTTCTAATCGCCAAGAAGAAAAACATCTAAAGTCTTACCGCACCAGAAATAGGCATTTTGTGAAGGGGGAAGATTGTTCTCATATTTTTAATTGGATAAGTAAGACTCAAAGGTGA 1374 0.4338 MINNGVCTLRTCFPFPGRSLFPPLQRSFTFRRRFLVTASQRKKKEKVIVISGPTGSGKSRLALELAKSLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILHPSEDYSAGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKSFSVITSEVNQELAELQRNEDWDTAVQLVVKAGDPKAQFLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGECSVADDSEISDMNTYGDGMEETSSSELDYEFISSELDYEFMCFFLSSHRLDLYRSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSAAEFYKFLFEFQKASRNFAKRQLTWFRNEKIYQWLDGSKPLETILSFINGAYHDWNGSLPVPEHLRMSRDISNRQEEKHLKSYRTRNRHFVKGEDCSHIFNWISKTQR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2107g00010 457 Hamap tRNA dimethylallyltransferase [miaA]. 47 395 IPR018022 GO:0008033
Vium2107g00010 457 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 383 IPR039657 -
Vium2107g00010 457 Gene3D - 159 226 - -
Vium2107g00010 457 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
Vium2107g00010 457 Gene3D - 44 446 IPR027417 -
Vium2107g00010 457 Pfam IPP transferase 80 378 - -
Vium2107g00010 457 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Vium2107g00010 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 175 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2107g00010 Vium-Chr2107 63559 72097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2107g00010 50 224 C2H2 Transcription Factor Family AT2G27760 29.508 4.62e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2107g00010 K00791 - gmx:100808814 791.571