Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2107g00008 ATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGGAGGAAGACAACAAAGGTAATTACGCGAGAGCGTTCCAACTTTACATGAACGCGTTGGAGTACTTCAAAACGCACCTCAAGTATGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACGGAGTACCTGCGTCGGGCCGAGGAGATCCGGGCCGTCCTCGACGATGGGCCCAGCGGCCCACCTTCCTCCGGGGATGCTGCCGTCGCTACCAGGCCCAAGACCAAGCCCAAGGACGGCGCGGGCGGCGACGGGGAGGATCCTGAACAGACCAAGCTCCGGGCCGGGCTCAACTCTGCCATCGTTAGAGAAAAGCCCGACGTGAAGTGGAACGACGTGGCGGGGCTTGAGAGCGCCAAACAGGCTCTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCTCAGTTTTTCACCGGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCACCGGGGACGGGTAAATCGTATTTGGCCAAGGCTGTTGCAACAGAAGCTGATTCTACGTTCTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGTTGGTTTCAAATCTTTTTGAAATGGCTCGTGAAAGTGCACCTTCTATCATATTCATTGATGAAATAGATTCTCTGTGTGGTCAGCGTGGCGAGGGTAATGAGAGTGAGGCTTCAAGACGAATTAAAACTGAAGTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTGGTTCTAGCGGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGACGTTTTGATAAGCGAATATACATACCCCTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAGTTTGACAGAAAGTGATTTTGAACATTTGGCCCGCAGGACAGAGGGGTTTTCAGGTTCAGATATAGCTGTCTGTGTCAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGCATGTGGATTCCATGTGGACCAAAGCAACAGAGTGCAATACAAATTACAATGCAGGAGCTTGCTGCGAAAGGACTTGCTTCACAGATCCTGCCACCACCTATATCGAGGACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGGCCGACCTCAATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAA 1302 0.4892 MYSNFKEQAIEYVKQAVEEDNKGNYARAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPPSSGDAAVATRPKTKPKDGAGGDGEDPEQTKLRAGLNSAIVREKPDVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTEVLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFEHLARRTEGFSGSDIAVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQSAIQITMQELAAKGLASQILPPPISRTDFDKVLARQRPTVSKADLNVHERFTKEFGEEG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2107g00008 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Vium2107g00008 433 SMART AAA_5 162 298 IPR003593 GO:0016887
Vium2107g00008 433 FunFam Vacuolar protein sorting-associated protein 4 125 305 - -
Vium2107g00008 433 MobiDBLite consensus disorder prediction 71 110 - -
Vium2107g00008 433 CDD MIT_VPS4 4 76 IPR045253 -
Vium2107g00008 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Vium2107g00008 433 PANTHER AAA DOMAIN-CONTAINING 17 431 - -
Vium2107g00008 433 SMART smart 2 79 IPR007330 -
Vium2107g00008 433 Gene3D - 298 413 - -
Vium2107g00008 433 Gene3D - 125 421 IPR027417 -
Vium2107g00008 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 428 IPR027417 -
Vium2107g00008 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Vium2107g00008 433 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Vium2107g00008 433 FunFam vacuolar protein sorting-associated protein 4A 298 413 - -
Vium2107g00008 433 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Vium2107g00008 433 CDD RecA-like_VPS4 124 294 - -
Vium2107g00008 433 Gene3D - 6 75 - -
Vium2107g00008 433 SUPERFAMILY MIT domain 2 83 IPR036181 -
Vium2107g00008 433 MobiDBLite consensus disorder prediction 96 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2107g00008 Vium-Chr2107 48360 52996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2107g00008 161 354 Calmodulin-binding Proteins AT3G56690 36.735 3.81e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2107g00008 K12196 - gmx:100801165 823.542