Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2107g00007 ATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGGAGGAAGACAACAAAGGTAATTACGCGAGAGCGTTCCAACTTTACATGAACGCGTTGGAGTACTTCAAAACGCACCTCAAGTATGAGAAGAACCCTAAGATCAAGGAGGCCATCACGCAGAAATTCACGGAGTACCTGCGTCGGGCCGAGGAGATCCGGGCCGTCCTCGACGATGGGCCCAGCGGCCCACCTTCCTCCGGGGATGCTGCCGTCGCTACCAGGCCCAAGACCAAGCCCAAGGACGGCGCGGGCGGCGACGGGGAGGATCCTGAACAGACCAAGCTCCGGGCCGGGCTCAACTCTGCCATCGTTAGAGAAAAGCCCGACGTGAAGTGGAACGACGTGGCGGGGCTTGAGAGCGCCAAACAGGCTCTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCTCAGTTTTTCACCGGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCACCGGGGACGGGTAAATCGTATTTGGCCAAGGCTGTTGCAACAGAAGCTGATTCTACGTTCTTCAGCATTTTTTAA 588 0.5493 MYSNFKEQAIEYVKQAVEEDNKGNYARAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPPSSGDAAVATRPKTKPKDGAGGDGEDPEQTKLRAGLNSAIVREKPDVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2107g00007 195 Gene3D - 125 194 IPR027417 -
Vium2107g00007 195 SUPERFAMILY MIT domain 2 83 IPR036181 -
Vium2107g00007 195 Gene3D - 6 75 - -
Vium2107g00007 195 MobiDBLite consensus disorder prediction 71 110 - -
Vium2107g00007 195 CDD MIT_VPS4 4 76 IPR045253 -
Vium2107g00007 195 SMART smart 2 79 IPR007330 -
Vium2107g00007 195 PANTHER AAA DOMAIN-CONTAINING 17 194 - -
Vium2107g00007 195 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Vium2107g00007 195 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Vium2107g00007 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 194 IPR027417 -
Vium2107g00007 195 MobiDBLite consensus disorder prediction 96 110 - -
Vium2107g00007 195 Pfam ATPase family associated with various cellular activities (AAA) 167 194 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2107g00007 Vium-Chr2107 48340 50609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2107g00007 109 194 Calmodulin-binding Proteins AT3G56690 39.326 4.96e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2107g00007 K12196 - gmx:100791614 369.007