Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2107g00002 ATGTGTATGTACTCTAATTATGTGAATTTAACTCAACTGGACTTAATTTTTGTTGATTTGCAGATGCATATGTGGGGTAATGGATCAGAATTTAGGAAAGGACCAGATTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGTTACTGCTGCGCGCAGGGTTGCAAGAACAACATCAACCATCCAAGGGCGAAGCCTTTGAAGGACTTCAGAACCCTCCAAACGCACTACAAAAGGAAGCACGGCACAAAGCCTTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTGAAAGGTGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTATGGTACTGCACTTGTGGCTCAGATTTCAAGCACAAAAGATCACTTAAGGATCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATCACTGGCTCTGATGAAGATGAGCTCAATGCTCATCATCATGCATGA 513 0.4308 MCMYSNYVNLTQLDLIFVDLQMHMWGNGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDELNAHHHA 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2107g00002 170 Gene3D Classic Zinc Finger 87 136 - -
Vium2107g00002 170 FunFam Zinc finger protein WIP2 58 140 - -
Vium2107g00002 170 SUPERFAMILY beta-beta-alpha zinc fingers 75 109 IPR036236 -
Vium2107g00002 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 109 IPR013087 -
Vium2107g00002 170 PANTHER ZINC FINGER PROTEIN WIP2 19 160 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2107g00002 Vium-Chr2107 4059 5111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2107g00002 17 157 C2H2 Transcription Factor Family AT1G08290 81.944 2.68e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2107g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2107g00002 - - gmx:100802773 336.265