Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2107g00001 CCTTCATATCTAAATTCCAACACAATATCTACTTCTTCTTCTTCTTCATCATCTTTTTCTTCTTTTTCCTTCACCCAGCATGACCTTGTTCATGAAACCATCCAATTCTTGCCCATTGAGGCCTCAAAAGATGAAGACCACCATCAAAGTTTTGAGGTGAAAGAGGAAAAGCTTGAACAAGTCACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAAAGGCATCATGAGGTTGTAGATGATGATGATGAGAAGATGATTTTCCATGTCAAGGAAGAAGAAGCTTCCTCCAAGAGAAGCTTCCATGGCTGCTCCTTTAATCAAGAGAGAAGGTTCTGGATTCCAACTCCAGCTCAGATCCTCGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTAATGGATCAGAATTTAGGAAAGGACCAGATTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGTTACTGCTGCGCGCAGGGTTGCAAGAACAACATCAACCATCCAAGGGCGAAGCCTTTGAAGGACTTCAGAACCCTCCAAACGCACTACAAAAGGAAGCACGGCACAAAGCCTTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTGAAAGGTGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTATGGTACTGCACTTGTGGCTCAGATTTCAAGCACAAAAGATCACTTAAGGATCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATCACTGGCTCTGATGAAGATGAGCTCAATGCTCATCATCATGCATGA 882 0.4354 PSYLNSNTISTSSSSSSSFSSFSFTQHDLVHETIQFLPIEASKDEDHHQSFEVKEEKLEQVTVALHIGLPDSAKRHHEVVDDDDEKMIFHVKEEEASSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGNGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDELNAHHHA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2107g00001 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 158 IPR013087 -
Vium2107g00001 293 SUPERFAMILY beta-beta-alpha zinc fingers 119 148 IPR036236 -
Vium2107g00001 293 SUPERFAMILY beta-beta-alpha zinc fingers 198 232 IPR036236 -
Vium2107g00001 293 Gene3D Classic Zinc Finger 208 268 - -
Vium2107g00001 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 232 IPR013087 -
Vium2107g00001 293 PANTHER ZINC FINGER PROTEIN WIP2 10 283 IPR043584 GO:0003700|GO:0010468
Vium2107g00001 293 Gene3D Classic Zinc Finger 125 148 - -
Vium2107g00001 293 FunFam Zinc finger protein WIP2 181 263 - -
Vium2107g00001 293 Pfam C2H2-type zinc finger 128 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2107g00001 Vium-Chr2107 6 3049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2107g00001 20 280 C2H2 Transcription Factor Family AT1G08290 60.424 3.32e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2107g00001 zf-C2H2_6 0.00016 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2107g00001 - - gmx:100802773 530.791