Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2096g00005 ATGGCGGCTGTGAGAAAAATAATTCAGGCCAATAAAAATAAAAATTTGTCGCCATCTCTTTTTTCTTTTCGCCGAGGAATTGCTTACAAGCTTTTTGTTGGAGGACTGTCCTTCTGCACCACACAGAAAGCACTGTCAGAGGCATTTTCCAACTACGGGCAAGTTCTTGAAGCCAAAGTTGTAACAGATAGGGTGTCAGACAGATCTAAGGGATTTGGGTTTGTCACCTATGCTTCAGCAGACGAGGCTGAGAATGCCATAGCAGAGATGAAAGGAAAGACATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAACCCAATACCAACAGTAAGGGTGCGATGCCAATTGCTAGAGGACCTCCTGAACCAACACCAGAAACTTGA 387 0.4289 MAAVRKIIQANKNKNLSPSLFSFRRGIAYKLFVGGLSFCTTQKALSEAFSNYGQVLEAKVVTDRVSDRSKGFGFVTYASADEAENAIAEMKGKTLNGRVIFVDYAKPNTNSKGAMPIARGPPEPTPET 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2096g00005 128 Gene3D - 8 114 IPR012677 -
Vium2096g00005 128 SUPERFAMILY RNA-binding domain, RBD 29 120 IPR035979 GO:0003676
Vium2096g00005 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Vium2096g00005 128 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 26 115 - -
Vium2096g00005 128 SMART rrm1_1 30 103 IPR000504 GO:0003723
Vium2096g00005 128 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2096g00005 Vium-Chr2096 54672 55934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2096g00005 31 106 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 4.26e-09 51.6