Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2096g00002 ATGTCGATAAACCACTACTCACCAGAAGCCAGACTATACTGGACCGACCAACATCAAGCCTCAACGTGGCTCGGAAACTCTCACACTCCTCGTTTCAACCTGAATGACAACCAGGAGGAGGTGGACGAGGAGGACGAGGAGGTGATGGAGAAAGCTACTGCTGCTGGTGCTGGTGGGGAGGCGGCGGCGGAAGAGGAGGAGAAGGAAGCGATGTTCGAGAAGCCGCTGACGCCGAGCGACGTGGGAAAGCTGAACCGGTTGGTGATCCCAAAACAACACGCGGAGAAGCACTTCCCGCTGGAGTCGTCGTCATCGTCGTCGTGCGGTGACAGCGCGAAGGGCGTGTTACTGAGTTTCGAGGACGAGTCCGGGAAGTGCTGGCGTTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTACGTGAAGGACAAACGCCTCCACGCTGGCGACGTTGTTTTCTTCCACAGACACCGTACCCATCCTCAACGCTTCTTCATCAACTCCTCCCGCCGCCAAGCCAACCCCCCCGCTCACGTTACCACCACCGCAACACCCTCCTTCTACTCTGCGCACCCTTATCCTGCGCATCAGCTCCCTTTCCCATACCAAACTCAGTCCCTTCATGCACCACCAGGTGGAGGGTCCCAAGGACAGAACCAAACGACACCGGGAGGGAACAGTTCAGGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAAGGATTCCCAAAACTCCACGCCACTATCCTCTTACACTCTCTCCTCAACAACAACAACAACAACACTTTCCCACCACCACCTCTTACACCCTCATACTACTACCTCTTTTTCTTCTTCTTCCTCCTCCTCCAACCCTCACCATCACCACATGCTACGTCAACAACCGTAA 933 0.5498 MSINHYSPEARLYWTDQHQASTWLGNSHTPRFNLNDNQEEVDEEDEEVMEKATAAGAGGEAAAEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLESSSSSSCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFINSSRRQANPPAHVTTTATPSFYSAHPYPAHQLPFPYQTQSLHAPPGGGSQGQNQTTPGGNSSGGRVLRLFGVNMECQPDKDSQNSTPLSSYTLSSTTTTTTLSHHHLLHPHTTTSFSSSSSSSNPHHHHMLRQQP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2096g00002 310 Gene3D - 59 188 IPR015300 -
Vium2096g00002 310 SUPERFAMILY DNA-binding pseudobarrel domain 69 176 IPR015300 -
Vium2096g00002 310 CDD B3_DNA 75 168 IPR003340 GO:0003677
Vium2096g00002 310 MobiDBLite consensus disorder prediction 24 71 - -
Vium2096g00002 310 SMART B3_2 72 179 IPR003340 GO:0003677
Vium2096g00002 310 MobiDBLite consensus disorder prediction 208 237 - -
Vium2096g00002 310 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 264 IPR044800 GO:0003700
Vium2096g00002 310 Pfam B3 DNA binding domain 72 175 IPR003340 GO:0003677
Vium2096g00002 310 MobiDBLite consensus disorder prediction 285 310 - -
Vium2096g00002 310 MobiDBLite consensus disorder prediction 208 241 - -
Vium2096g00002 310 ProSiteProfiles B3 DNA-binding domain profile. 72 181 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2096g00002 Vium-Chr2096 22772 24642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2096g00002 65 270 RAV Transcription Factor Family AT5G06250 48.182 1.65e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium2096g00002 B3 7e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2096g00002 K09287 - gmx:100802734 365.925