Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2089g00001 ATGGAACTTAGTAGTTTGGTTTTCTGGCTACTGGGGTTGCTGCTTTTGCAGTTGATGGAGATTTCTTCTGCTGTTCTTTCTCCATCTGGCATAAACTATGAAGTTGTAGCTCTGATGGCCATAAAGGGTGACTTGACTGATCCTCACAACGTTCTGGAAAATTGGGATTCTAGTTCTGTTGATCCATGTAGCTGGAGAATGGTTACGTGTTCCTCTGATGGCTCCGTTTCTGCATTGGGATTTCCGAGTCAGAACTTGTCTGGTACACTATCTCCCGGAATTGGAAACCTCACTAACTTGCAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTAGGATTCCTGCTGCAATAGGAAACTTGGAAAGGCTTCACACACTTGATCTTTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGAGGTTAAACAATAACAGCCTTACGGGATCCTGTCCTCAGTCTCTTAGCAATATCGAAGGTCTAACCCTTGTGGACCTCTCCTACAACAATCTGAGTGGTTCCTTGCCTAGAATATCGGCAAGAACATTAAAGATTGTGGGTAACCCTTTAATTTGTGGTCCAAAAGCAAACAACTGTTCTTCTGTTTTACCGGAGCCACTTTCCTTCCCTCCAGATGCACTAAGAGGCCAATCTGATTCTGGTAAAAAAAGCCATCACGTGGCACTTGCTTTCGGTGCAAGCTTTGGTGCTGCATTTGTCATTGTGATTATAGTTGGGTTTCTTGTTTGGTGGCGATATAGACGCAACCAGCAGATATTCTTTGATNTAGTTGAGCATATTGGAAGTTGCTGTTTTGGTGAGGGTGGGGTTGCTTTGTGTGGGAATCTGATTCCAGAGACTGGCTTTTTCTGTTTGGATAAGAGTATGGAACTTAGTAGTTTGGTTTTCTGGCTACTGGGGTTGCTGCTTTTGCAGTTGATGGAGATTTCTTCTGCTGCTCTTTCTCCATCTGGCATAAACTATGAAGTTGTAGCTCTGATGGCCATAAAGGGTGACTTGACTGATCCTCACAACGTTCTGGAAAATTGGGATTCTAGTTCTGTTGATCCATGTAGCTGGAGAATGGTTACGTGTTCCTCTGATGGCTCCGTTTCTGCATTGGGATTTCCGAGTCAGAACTTGTCTGGTACACTATCTCCCGGAATTGGAAACCTCACTAACTTGCAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTAGGATTCCTGCTGCAATAGGAAACTTGGAAAGGCTTCACACACTTGATCTTTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGAGGTTAAACAATAACAGCCTTACGGGATCCTGTCCTCAGTCTCTTAGCAATATCGAAGGTCTAACCCTTGTGGACCTCTCCTACAACAATCTGAGTGGTTCCTTGCCTAGAATATCGGCAAGAACATTAAAGATTGTGGGTAACCCTTTAATTTGTGGTCCAAAAGCAAACAACTGTTCTTCTGTTTTACCGGAGCCACTTTCCTTCCCTCCAGATGCACTAAGAGGCCAATCTGATTCTGGTAAAAAAAGCCATCACGTGGCACTTGCTTTCGGTGCAAGCTTTGGTGCTGCATTTGTCATTGTGATTATAGTTGGGTTTCTTGTTTGGTGGCGATATAGACGCAACCAGCAGATATTCTTTGATGTTAACGAACATTATGATCCGGAGGTGCGTCTTGGTCATTTAAAAAGGTTTTCATTCAAAGAGCTTCGAACTGCAACAGACCATTTCAACTCAAAGAACATTCTTGGAAGAGGTGGCTTTGGAATAGTCTACAAGGCATGCCTAAATGATGGGTCTGTTGTGGCTGTTAAGAGGCTAAAGGACTACAATGCAGCCGGTGGTGAGATCCAATTTCAAACAGAAGTTGAGACAATCAGTTTGGCTGTCCACCGGAATCTTCTCAGGCTTTCGGGGTTTTGCAGCACTCAGCATGAAAGGCTCCTCGTTTATCCATATATGTCTAATGGAAGTGTAGCCTCTAGATTAAAAGATCATATCCATGGCCATCCGGCGTTAGATTGGACTAGGCGGAAGAGAATAGCTTTAGGTACAGCAAGAGGGTTGGTTTACTTGCATGAACAATGTGACCCTAAGATTATTCACCGTGATGTGAAAGCAGCTAACATATTGCTAGATGAAGACTTTGAAGCTGTTGTTGGCGATTTTGGTTTAGCCAAGCTTCTGGATCATAGAGACTCCCATGTGACCACTGCCGTGCGTGGCACTGTTGGTCACATTGCTCCAGAGTATCTATCCACTGGCCAATCATCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAACTGATCACAGGTCACAAGGCTCTAGATTTTGGGCGAGCAGCGAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCACCAGGATGGAAGATTAAGTCAAATGGTGGACAAAGATCTAAAGGGAAACTTTGATCTGATTGAGTTAGAAGAAATGGTTCAGGTTGCACTCTTGTGCACACAGTTCAATCCTTCACACCGCCCCAAGATGTCAGAAGTATTAAAGATGTTGGAAGGGGATGGCTTGGCTGAGAGATGGGAGGCCTCACAGAGGATTGAAACACCAAGGTTTCGGTCTTGTGAGCCTCAAAGATATTCAGATTTAATAGAGGAATCTTCACTCATAATTGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 2790 0.438 MELSSLVFWLLGLLLLQLMEISSAVLSPSGINYEVVALMAIKGDLTDPHNVLENWDSSSVDPCSWRMVTCSSDGSVSALGFPSQNLSGTLSPGIGNLTNLQSVLLQNNAISGRIPAAIGNLERLHTLDLSNNAFSGEIPSSLGGLKNLNYLRLNNNSLTGSCPQSLSNIEGLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKANNCSSVLPEPLSFPPDALRGQSDSGKKSHHVALAFGASFGAAFVIVIIVGFLVWWRYRRNQQIFFDXVEHIGSCCFGEGGVALCGNLIPETGFFCLDKSMELSSLVFWLLGLLLLQLMEISSAALSPSGINYEVVALMAIKGDLTDPHNVLENWDSSSVDPCSWRMVTCSSDGSVSALGFPSQNLSGTLSPGIGNLTNLQSVLLQNNAISGRIPAAIGNLERLHTLDLSNNAFSGEIPSSLGGLKNLNYLRLNNNSLTGSCPQSLSNIEGLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKANNCSSVLPEPLSFPPDALRGQSDSGKKSHHVALAFGASFGAAFVIVIIVGFLVWWRYRRNQQIFFDVNEHYDPEVRLGHLKRFSFKELRTATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQHERLLVYPYMSNGSVASRLKDHIHGHPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDLIELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRSCEPQRYSDLIEESSLIIEAMELSGPR 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2089g00001 929 Gene3D Transferase(Phosphotransferase) domain 1 685 900 - -
Vium2089g00001 929 FunFam Somatic embryogenesis receptor kinase 1 577 684 - -
Vium2089g00001 929 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 315 892 - -
Vium2089g00001 929 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Vium2089g00001 929 SMART LRR_typ_2 451 474 IPR003591 -
Vium2089g00001 929 SMART LRR_typ_2 97 121 IPR003591 -
Vium2089g00001 929 SMART LRR_typ_2 145 168 IPR003591 -
Vium2089g00001 929 SMART LRR_typ_2 403 427 IPR003591 -
Vium2089g00001 929 SUPERFAMILY Protein kinase-like (PK-like) 585 882 IPR011009 -
Vium2089g00001 929 Gene3D Ribonuclease Inhibitor 31 211 IPR032675 -
Vium2089g00001 929 Gene3D Ribonuclease Inhibitor 337 517 IPR032675 -
Vium2089g00001 929 Pfam Protein kinase domain 609 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2089g00001 929 Pfam Leucine rich repeat 430 488 IPR001611 GO:0005515
Vium2089g00001 929 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
Vium2089g00001 929 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Vium2089g00001 929 Gene3D Phosphorylase Kinase; domain 1 577 684 - -
Vium2089g00001 929 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vium2089g00001 929 Pfam Leucine rich repeat N-terminal domain 338 377 IPR013210 -
Vium2089g00001 929 ProSiteProfiles Protein kinase domain profile. 608 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2089g00001 929 SMART serkin_6 608 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2089g00001 929 SUPERFAMILY RNI-like 65 494 - -
Vium2089g00001 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 731 743 IPR008271 GO:0004672|GO:0006468
Vium2089g00001 929 FunFam Putative LRR receptor-like serine/threonine-protein kinase 337 518 - -
Vium2089g00001 929 FunFam Somatic embryogenesis receptor-like kinase 1 685 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2089g00001 Vium-Chr2089 3461 13168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2089g00001 373 929 Receptor kinase-like Gene Family AT1G60800 76.667 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium2089g00001 Pkinase 4.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2089g00001 - - vum:124829101 1761.89