Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2088g00002 ATGTTATCTGTCTCTCAGAATTCTTTATCAGGTTTAATTCCATTTACACTTGGTCAACTCATCAATTTGCAATTTCTCTATCTTGAATCAAACAAACTTGAAGGTAGGATTCCGACAGAATTGGGGAATTTGATAAAATTACAGACATTACATCTATCACGTAATTTATTCACAGGTTCAATTCCTCATACATTGGGTCAATTAGAGAACTTGATGGATTTCTTCTTTGAATCTAACCAAATTACTGGTCCTATACCTATAGAATTTGGAAATTTAAAAAGTTTACAAAGATTACATCTCTCAAATAATTCCCTCAACGGTTCAATCCCTCCTACTTTAGGTCAATTGGAGAATTTGGTACATCTCTACCTTAATTATAATGAAATAGAAGGTCAGATACCTGAAGAATTAGGAAATTTGTCCAAGTTGGAAATTTTGCAACTTTCTCATAATAGGATTTCAGGTTTACTACCTCCAAAACTCTTGCAAATGGACAAATTATACGGTTCAATACCATTAGAAACTATGAAATGTCCCCATACTGTTGATTTAAGCTTCAACTTCTTTAATGGAAGCATAACCTCTCGAATTGGTTGTGTGAGTGACCTCAATCTTAGTCACAATTTCCTTGTTGGTGAGATTTCACCTCTTTTGAAAATGAGTTTTGTTCTTAGTCGATTGGATCTTAGCTATAATAATCTTTCGGGTAAAGTACACAAGGAACTTGCTAGTCTATCATATATAAACCTTTCATACAATTCCTTTGACTTTTCACAAGACCTTGACTCAAAATTGGAGGTACCAGATTACTGTTTTTTTCAGGAAGACTCATTAATTGATGATCACCACATGCCCAATTTTACATACTGCAACTTGCTCAATGAGACAAATCCTCAAAGTAGAAAAAATAAGCCCATCATTTTGTTAATTGTTCTTCCAGTCATTTTCTTCAGTGTTGTAATACTCCTTCTAATATTATATTTCTCAAGATGTATTCCTAAGAAAAAATGTGAAGGAATATCAACAAAGAATGGAGACTTGTTTTCTATATGGAACTATGATGGTAAAATTGCATTTGAGGATATCATTGAAGCAACCGAAGACTTTGACCTTAAGTATTGCATTGGGACAGGCGCATATGGTTGTGTTTATAGAGCACAACTACCCAGCGGCAATATTGTTGCATTAAAAAAACTCCATTGTGTGGAATCCCAAAATCCATCTTTTGACAAAAGTTTCCGTAATGAGGTGAAGATGTTAACAAAAATCCATCATAAAAATATTGTAAAGCTTCATGGTTTTTGCCTCCACAATCGGTGTAAGTTTTTGGTCTATCAATACATGGAAAGAGGTAGTTTATTTTATACTTTGAGTAATGAAGTGGAAGCTAAGGAGTTGAATTGGAGTAAGAGGGTGAATGTTATTAAAGGAATGGCAGAGGCTTTATCATACATGCATCATGATTGTAGCCCACCAATTGTTCATCGAGATGTAACAAGTAGCAATGTTCTGTTAAACTCAAAATTAGAGGCTTATATCTCAGACTTTGGCACAGCTAGACTCCTTCAACCTGATACATCAAATCAAACCTTGGTAGTTGGCACTCGTGGCTACATTGCTCCAGAGCTTGCTTATACATTAAGCGTGACAAAAAAATGCGATGTTTATAGTTTTGGAGTGGTGACTTTGGAAACATTAATGGGAAAACATCCTGGAGATCTAATCTTGTCATTATCAAACCCAAGAACTGAAAATATGTTCGTGAAAGATCTTTTGGATTCACGTCTTCCTCTGCCTCTCTGGAGAGAAGCTCAAGATATCATTCTCGTGATAACACTAGCATTATCATGTTTGTGCTCCAAACCAAACTTAAGACCATCAATGCAACAAGTGGCTGAGAAACTCTCAAGTTTCAAACTAGTATTATCTTTGCCTTTTCATGAAATTTTGATTCGTGAATTAATGAGTCAAGACATATTTCATCTTTCTTTGAATTGTCAAGGATGA 2007 0.3473 MLSVSQNSLSGLIPFTLGQLINLQFLYLESNKLEGRIPTELGNLIKLQTLHLSRNLFTGSIPHTLGQLENLMDFFFESNQITGPIPIEFGNLKSLQRLHLSNNSLNGSIPPTLGQLENLVHLYLNYNEIEGQIPEELGNLSKLEILQLSHNRISGLLPPKLLQMDKLYGSIPLETMKCPHTVDLSFNFFNGSITSRIGCVSDLNLSHNFLVGEISPLLKMSFVLSRLDLSYNNLSGKVHKELASLSYINLSYNSFDFSQDLDSKLEVPDYCFFQEDSLIDDHHMPNFTYCNLLNETNPQSRKNKPIILLIVLPVIFFSVVILLLILYFSRCIPKKKCEGISTKNGDLFSIWNYDGKIAFEDIIEATEDFDLKYCIGTGAYGCVYRAQLPSGNIVALKKLHCVESQNPSFDKSFRNEVKMLTKIHHKNIVKLHGFCLHNRCKFLVYQYMERGSLFYTLSNEVEAKELNWSKRVNVIKGMAEALSYMHHDCSPPIVHRDVTSSNVLLNSKLEAYISDFGTARLLQPDTSNQTLVVGTRGYIAPELAYTLSVTKKCDVYSFGVVTLETLMGKHPGDLILSLSNPRTENMFVKDLLDSRLPLPLWREAQDIILVITLALSCLCSKPNLRPSMQQVAEKLSSFKLVLSLPFHEILIRELMSQDIFHLSLNCQG 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2088g00002 668 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Vium2088g00002 668 ProSitePatterns Tyrosine protein kinases specific active-site signature. 493 505 IPR008266 GO:0004672|GO:0006468
Vium2088g00002 668 SMART LRR_typ_2 140 164 IPR003591 -
Vium2088g00002 668 SMART LRR_typ_2 20 43 IPR003591 -
Vium2088g00002 668 SMART LRR_typ_2 44 68 IPR003591 -
Vium2088g00002 668 SMART LRR_typ_2 92 116 IPR003591 -
Vium2088g00002 668 FunFam Piriformospora indica-insensitive protein 2 87 168 - -
Vium2088g00002 668 Pfam Leucine rich repeat 46 105 IPR001611 GO:0005515
Vium2088g00002 668 Pfam Leucine rich repeat 114 153 IPR001611 GO:0005515
Vium2088g00002 668 SUPERFAMILY L domain-like 2 255 - -
Vium2088g00002 668 FunFam MDIS1-interacting receptor like kinase 2 448 640 - -
Vium2088g00002 668 Pfam Protein kinase domain 374 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2088g00002 668 FunFam Leucine-rich repeat receptor protein kinase MSP1 333 447 - -
Vium2088g00002 668 ProSiteProfiles Protein kinase domain profile. 369 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2088g00002 668 Gene3D Phosphorylase Kinase; domain 1 335 447 - -
Vium2088g00002 668 Gene3D Transferase(Phosphotransferase) domain 1 448 642 - -
Vium2088g00002 668 Gene3D Ribonuclease Inhibitor 1 266 IPR032675 -
Vium2088g00002 668 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 46 636 - -
Vium2088g00002 668 ProSiteProfiles Leucine-rich repeat profile. 142 163 IPR001611 GO:0005515
Vium2088g00002 668 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 86 - -
Vium2088g00002 668 SUPERFAMILY Protein kinase-like (PK-like) 355 635 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2088g00002 Vium-Chr2088 11898 14093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2088g00002 2 541 Receptor kinase-like Gene Family AT4G08850 37.002 2.48e-115 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium2088g00002 Pkinase 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2088g00002 - - vum:124829098 1315.83