Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2086g00001 ATGAGAGGTGTTGTAATTGGAGGATGTGTCTTCATATTTTGTTGTTTTAGACGTAAGTCTTTAACCCGACTGGTCAAATTTCGTTTTACCAGAAACCATGATTCAAATATTGAAGCATTCCTAAGAAATCATGGAGCCATAGCACAGAAAAGATACAAATTTTCAGAAGTGAAAAAAATGACCAATTCATTCAAAGTTAAACTTGGTCAAGGTGGTTTTGGTACAGTATACGAAGGAAAACTACTAACAGGTAGCCCTGTGGCCGTAAAGTTACTGAAAGCATCCAAAAGAAATGGTGAAGAGTTCATCAATGAGGTTGCCAGCATCAGTAGAACATCTCATGTTAATATTGTCACACTTGTTGGATTTTGTTTGGAAGGCTCTAAAAAGGCTCTCATCTATGAGTTTATGGCTAATGGTTCTTTGGATAAGTTCATCTACAACAGAGGGCCAGAAAATATTGTATCTTTGACCTGGGAGAATTTATATCAAATTGCCATAGGAATAGCTAGAGGGTTGGAGTACTTGCACAGAGGCTGCAACACTAAAATTTTACATTTTGACATAAAGCCACATAATATTCTTTTGGACGAGAATTTTTGTCCTAAAATATCAGATTTTGGACTAGCAAAGCTGTGTCCCAGGAATGAAAGCATTATTTCTATGTCTGATAAAAGAGGAACAATGGGGTATTATGCTCCTGAAATGGTCAATAGACATTTTGGTGGAGTTTCACAAAAGTCTGATGTGTACAGTTATGGAATGATGCTACTGGAAATGGTAGGAGGAAGGAAGAACATTAATCCTGAAGCTAGTCATACGAGTGAGATATACTTCCCACATTTTGCATACAGAACACTTGATGTGGATAATGATGTGAGACCATATGAAGTGATGAATGCAGAAGAAGATGAGATTGCAAAGAGAATGACTGTAGTTGGCTTATGGTGCATTCAATCGCTTCCAAATGATAGACCTACAATGAGCAGAGTGGTAGAAATGTTGGAAGGTAACATGAATTCTTTGGAAATGCCTCCAAAGCCTCCTTCTTGA 1053 0.3742 MRGVVIGGCVFIFCCFRRKSLTRLVKFRFTRNHDSNIEAFLRNHGAIAQKRYKFSEVKKMTNSFKVKLGQGGFGTVYEGKLLTGSPVAVKLLKASKRNGEEFINEVASISRTSHVNIVTLVGFCLEGSKKALIYEFMANGSLDKFIYNRGPENIVSLTWENLYQIAIGIARGLEYLHRGCNTKILHFDIKPHNILLDENFCPKISDFGLAKLCPRNESIISMSDKRGTMGYYAPEMVNRHFGGVSQKSDVYSYGMMLLEMVGGRKNINPEASHTSEIYFPHFAYRTLDVDNDVRPYEVMNAEEDEIAKRMTVVGLWCIQSLPNDRPTMSRVVEMLEGNMNSLEMPPKPPS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2086g00001 350 Pfam Protein kinase domain 65 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2086g00001 350 Gene3D Transferase(Phosphotransferase) domain 1 137 344 - -
Vium2086g00001 350 SMART serkin_6 62 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2086g00001 350 PANTHER RUST RESISTANCE KINASE LR10-RELATED 34 348 IPR045874 GO:0004672
Vium2086g00001 350 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Vium2086g00001 350 FunFam PR5-like receptor kinase 137 347 - -
Vium2086g00001 350 SUPERFAMILY Protein kinase-like (PK-like) 46 336 IPR011009 -
Vium2086g00001 350 FunFam serine/threonine-protein kinase PBS1-like 31 136 - -
Vium2086g00001 350 Gene3D Phosphorylase Kinase; domain 1 25 136 - -
Vium2086g00001 350 ProSiteProfiles Protein kinase domain profile. 62 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2086g00001 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Vium2086g00001 350 PIRSF ILK 15 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2086g00001 Vium-Chr2086 15706 17909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2086g00001 28 348 Receptor kinase-like Gene Family AT4G18250 57.879 1.47e-125 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium2086g00001 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2086g00001 - - vra:106779094 663.685