Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2084g00009 ATGACAGATTTTCAGCCGCTACAGCAGAAACCCGAGCCTGCTGATTCCCATTCCGAGTTTGAGAGGGGACTGGAGGAGTTTATGCGCGGGCACTTGGATGAGTGTATGTCGTTTGCTTCATGTAGCTCCTCCCGCGCACCTGATGATGAGGATGACGAGAGCGATCAGCTGGTTCGGAGGAGACGGAGGTCTGACCTTGAAGGGGATGATTTAGCAGAGTCGTCGGCTGCACGCCGGCGGCATTCAAGAATTTTGAGCAGATGGGCTGCACGGCAGGCACAGGAAATGATAACCACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCGGGTTTGCATACAGTCTCGATGTTGGATTCTTCTTTCCTGAGGGGTTCACAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCAAGCACTCAGGCGTCTGCCATTTTGCAGATGTGGCGTGAATTGGAAGATGAACATTTGTTGAATCGGGCACGGGAAAGGATGAGGGTAAGGTTGCGGCAGCAGAGGAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCAGATAGTCGAGGCAGTGAGAATCATGGGAGTTTGGGAGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGGTCGAGGAATGCACATGGGGATCATAACGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATAGTTCGGGGGTGGATGGAAAGTGGCATTAGTGATCATTCCTCCAATGTGAGTCAGCGAAACAATAACCGGAGAGCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTAAGAATTGTCAGGGAGTGGGTACAAATGACTAGCCAGCAGAGAGGTTCGCGTGGGAGCCGTAGGGATTCTCAAGTAAGTGAAGGTGCTCAAGCTGATCCAGTCCGTGATGTAGCTGACAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGACATGTTGAGGTTGCGCGGAAGACAGGCTCTAGTTGATTTGTTAGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGATTGCTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTTAGAGGTAGATTCCTGCGAAATGAAAGAACTGTTGAAGACGAGAGGCCACCATCTATGGCCGCTAGTGAATTAGTTCAGCTAAGACAGCGGCACACAGTCTCTGGTTTAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTCCGTGGTCAAGCAGGCACAAATCCTGATACCACATCAAATAGTAATGCCACTGAAACAAGAGGGGATGAAAACCAAGCAAACAGTATGGTAGATGGCCAACAAGAAAATTATGAACAACAGCAGATTAGGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATGGAACAGGAACTATGGAGACTAGCACAAGTGAGAGTATTAGTTGGCAAGAAACTGGTAACCAAGGAGGGAATTGGCAGGAACAAATTACTGAGGAAGGGGGAGGAAATTGGCAACATAGTCCATTCAATCAGATGAGAGATGGAAGGGCAGTCAATGATTGGCCACAGGAACCTCCCAGAAATTTAGCTGGGGAAAATCCTCATCCGCGGGAAGGTCAAAGAATTTGGCACGAAGATAACAATAGGGAAACTGCTGGTAATTGGTCTGATGGACCTTCTGGAGTTTCGAGGAATCACCGTGGGGTTCCTGTTAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTACGCAGTGGTTTCCGCGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATCGGAACTTGCCGACACCAACTCCTGCTTCACCTGAACGGGACCCAGATCAGCAGACTGGTGAACGTGCTGAGGGTCAGCATGAAACAATTAACAGACCTTCACTGGTGTTGCCATCTCCACCTGTGCCTCCGCCACAACCTCTGTGGCACCAGGATTTACATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGTATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCAGCTCTGAACCGCTCAGCCGGTGAAAACGGATTGGGTGCTGAGACATCTGATGATGGGTCTAGATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATAGATTCTCTTTTGTACAGATGCGGGCACATGTGTACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2547 0.4825 MTDFQPLQQKPEPADSHSEFERGLEEFMRGHLDECMSFASCSSSRAPDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRQQRNSDSNTNVSSTMSDSRGSENHGSLGDASESENDYGTWSHDQIGSRNAHGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVSEGAQADPVRDVADNDESQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQAGTNPDTTSNSNATETRGDENQANSMVDGQQENYEQQQIRSLETDVRQLPNGTGTMETSTSESISWQETGNQGGNWQEQITEEGGGNWQHSPFNQMRDGRAVNDWPQEPPRNLAGENPHPREGQRIWHEDNNRETAGNWSDGPSGVSRNHRGVPVRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQTGERAEGQHETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSRWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2084g00009 848 Coils Coil 725 745 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 40 78 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 222 244 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 481 587 - -
Vium2084g00009 848 SUPERFAMILY RING/U-box 795 841 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 431 459 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 125 146 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 1 24 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 433 459 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 649 689 - -
Vium2084g00009 848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 846 IPR013083 -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 177 221 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 296 334 - -
Vium2084g00009 848 ProSiteProfiles Zinc finger RING-type profile. 796 835 IPR001841 -
Vium2084g00009 848 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 848 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 173 244 - -
Vium2084g00009 848 Pfam Zinc finger, C3HC4 type (RING finger) 793 840 - -
Vium2084g00009 848 CDD mRING-HC-C3HC5_NEU1 793 845 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 52 78 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 481 532 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 557 571 - -
Vium2084g00009 848 MobiDBLite consensus disorder prediction 296 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2084g00009 Vium-Chr2084 23079 29744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2084g00009 796 842 C3H Transcription Factor Family AT3G06140 42.553 1.38e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2084g00009 - - gmx:100805607 1520.37