Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2079g00030 ATGGTTCTCTCCAAAACGGCATCGGAGACGGACGTTTCTGTCCATTCAACCTTCGCCTCTCGCTATGTGCGAACAATTCTTCCCAGGTTCAAGATGGGAGAGCAATCGATCCCGAAGGAAGCGGCGTACCAGATCATAAACGACGAGCTGATGTTAGATGGAAATCCGAGGCTGAACCTGGCGTCGTTTGTGACGACGTGGATGGAGCCTGAATGTGACAAACTCATAATGGCTGCCATTAACAAAAACTACGTGGACATGGATGAGTACCCTGTCACCACTGAACTCCAGAACCGTTGCGTTAACATGATAGCTCACCTTTTCAATGCACCACTCGAGGAGTCAGAACCTGCAGTTGGTGTTGGTACGGTTGGCTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGGAGATGGCAGAATAGAAGGAAACAAGAAGGGAAGCCTTGTGATAGTCCCAATATTGTTACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCGAGGTACTTTGAAGTGGAGTTGAAAGAGGTGAAGCTGAGTGATGGATACTTTGTAATGGACCCTGACAAAGCAGTGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACTTTGAACGGAGAGTTTGAAGATGTCAAGCGCTTAAATGATCTCCTACTAGAAAAGAATCAGACAACTGGATGGGACACTCCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCACCGTTTCTTTATCCAGAGCTTGAGTGGGACTTTCGGTTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTCTAGTCTATGCTGGAATTGGTTGGGTCATTTGGAGAACCAAGGAAGACCTTCCCGAGGAACTCATTTTCCACATTAATTATCTCGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTTATTGCCCAGTACTACCAACTAATTCGATTGGGTTTTGAGGGATACAAAATGGTGATGGAAAACTGCAGAGACAACATGGCAGTGCTTAAGGAAGGTCTAGAGAAAACTGAAAAGTTCGACATTGTGTCTAAAGACATCGGTGTCCCATTGGTGGCCTTCACTTTGAAGGATCACAGCCACTTCAATGAGTTCCAAATCTCTGACCTGCTGAGGCGCTATGGATGGATAGTGCCAGCATACACTATGCCTCCAGATGCAGAAAATGTCACAGTACTTCGTGTTGTGGTTAGGGAGGACTTCTCTCGCACCCTTGCGGAGCGTCTTGTCACTGATCTCACCAAAGTGGTGCACGAGCTGGAGCTGCTTCCTGCTAGGGTAATCAGCAGCACCGTAACGACTGGAGAAGATGGTGAAGTCACCGAGGGAAAAGTATTGGTTGCCAAGAAGAGTGAATTAGAGACACAGAGGGCAATCACTTCAGCTTGGAAGAAGTTTGTGATGGAGAAGAAGAAGATGAATGGTGTTTGTTAG 1506 0.4668 MVLSKTASETDVSVHSTFASRYVRTILPRFKMGEQSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESEPAVGVGTVGSSEAIMLAGLAFKRRWQNRRKQEGKPCDSPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYFVMDPDKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLLEKNQTTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYKMVMENCRDNMAVLKEGLEKTEKFDIVSKDIGVPLVAFTLKDHSHFNEFQISDLLRRYGWIVPAYTMPPDAENVTVLRVVVREDFSRTLAERLVTDLTKVVHELELLPARVISSTVTTGEDGEVTEGKVLVAKKSELETQRAITSAWKKFVMEKKKMNGVC 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2079g00030 501 Gene3D - 361 448 - -
Vium2079g00030 501 FunFam Glutamate decarboxylase 1 65 - -
Vium2079g00030 501 NCBIfam glutamate decarboxylase 16 445 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vium2079g00030 501 PANTHER GLUTAMATE DECARBOXYLASE 1 501 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vium2079g00030 501 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Vium2079g00030 501 FunFam Glutamate decarboxylase 66 360 - -
Vium2079g00030 501 FunFam Glutamate decarboxylase 361 448 - -
Vium2079g00030 501 Gene3D - 1 65 - -
Vium2079g00030 501 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vium2079g00030 501 Gene3D - 66 360 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2079g00030 Vium-Chr2079 324182 329132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2079g00030 1 501 Calmodulin-binding Proteins AT5G17330 82.669 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2079g00030 K01580 - gmx:100791696 926.776