Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2079g00029 ATGTCGCATCTTTCAACGCTCTTTATGTTTGCCTTCTTCAATTTCGTAGCTGCAGTCACCGAGTTCGACTTTGGAACTTTAACATTGGGAAGCCTCAAGCTTCTGGGGGACGCTCACTTTAACAACGGCACCGTAAGCCTCACGCGCGACCTCGCCGTTCCCACCTCCAGCGCCGGCAGAGCTCTTTACTCCCGTCCGGTTAGGTTCCGCCTTCCCGGTAACCGCTCTCCGGCCAGCTTCACCACCTTCTTTTCCTTCTCCGTCGCCAACCTCAACCCATCCTCCATCGGCGGCGGCCTCGCCTTCGTCCTCTCGCCGGACGATGAAACGATCGGCGATGCCGGTGGATTTCTTGGACTTAGCGCAGCCGCCGCCGCCGCGGATGGTGGCGGCGGCGGGTTTATTGCCGTGGAGTTTGATACGCTTATGGACGTAGAGTTTAAGGACATTAATGGGAACCACGTTGGGGTGGACTTAAACAGCGTTGTTTCGAGCGAGGTTGGTGATTTGGAGAGCGTTGGGATCGATCTGAAGAGCGGTGACCTAATTAACGCGTGGATTGAGTTCGATGGATCGAGCAAAGGATTAAGCGTGTGGGTTTCGTATTCCAATTTGAAACCGAAAGATCCCGTGTTGTCGACGAGCCTCGATGTGGATATGTATTTGAGTGATTTTATGTATGTGGGGTTCTCAGGTTCTACGCAGGGTAGCACAGAGATTCACAGAATAGAGTGGTGGAGTTTTGGCTCTTCTTTTGATGTTGCGGCAGGGGCGGCCCCACCGCCTCCGCCGGCGACGAGTCTGATGAACCCGACGGCGAATGTGGTGAAGTCGGCGCCTCCTTCTCCGGCTCCTACTAACAGTGAAGAGAAAGATAGCAAAAGCAAATCGTCTTGCCACAATGGGTTGTGTAAGCAGAATTTAGGAGCGGTTGCTGGTGTTGTTAGTGCCGGGGCTTTTGTTTTGGCTATCTTTGCCGGTGCATTGATTTGGTTTTACTCTAAGAAGGTTAAGCGTGTTAACAAGTTTGATTCGCTTGGTCCGGAGATCATTAAAATGCCGAAGCAGTTTACCTACAAGGAGCTGAAGTCTGCTACCAAGTGTTTCAATGCTAATAGGATCATTGGTCATGGCGCGTTTGGGACTGTGTATAAGGGGGTTTTGCCTAAAAACAGGGACAATGTTGCGATGAAGAGATGCAGCCATAGTAGTCAGGGGAAGAATGAATTTTTGTCTGAGTTGTCTATCATTGGGAGCCTGAGGCATCGGAATCTGGTTCGGCTTCAAGGGTGGTGCCATGAAAAAGGGGAGATTCTGCTGGTGTATGACTTGATGCCCAATGGGAGTTTGGACAAGGCTTTGTTCGAGGCTAGGACACCTCTTCCCTGGTCTCACCGGCGCAAGATTTTGTTGGGCGTGGCCTCTGCCTTGGCCTACTTGCATCAAGAGTGTGAGAATCAGGTGATTCACAGGGACATCAAGACTAGTAATATAATGTTGGATGAAGGGTTCAACGCCAGGTTGGGAGATTTTGGTTTGGCGAGGCAAACGGAGCATGATAAGTCGCCGGATGCCACCGTGGCTGCTGGGACAATGGGGTACCTGGCACCCGAGTATCTCCTTACAGGAAAGGCTACAGAGAAAACTGATGTGTTCAGCTATGGTGCAGTGGTTCTTGAGGTGGCAAGTGGGAGAAGACCGATAGAGAGGGATGGGAATGGAGGTGGTAAAGGTGGAATTAGCTGCAATTTGGTAGAATGGGTGTGGAGTTTGCACCGGGAAGGAAGGTTGCAATTGGCGGCTGATGCAAGGCTTGAAGGGGAGTTTGATGAGGCGGAGATGAGGAGGGTACTGTTGGTTGGGCTAGCTTGCTCTCACCCTGATCCATTGGCTAGACCTACTATGAGGGGTGTGGTTCAGATGCTGGTGGGGGAAGCTGAAGTGCCTATTGTTCCAAGAACCAAGCCTTCCACAGGTTTCAGTACTTCCCACTCTTACTTACTGATGAGCTTGCAAGATAGTGTATCTGACTGTGATGGTATAATCACCATCTCTACATCCACATCAGAGAACAGCTTCAATCTTGGAGATATAGTCTGA 2100 0.5105 MSHLSTLFMFAFFNFVAAVTEFDFGTLTLGSLKLLGDAHFNNGTVSLTRDLAVPTSSAGRALYSRPVRFRLPGNRSPASFTTFFSFSVANLNPSSIGGGLAFVLSPDDETIGDAGGFLGLSAAAAAADGGGGGFIAVEFDTLMDVEFKDINGNHVGVDLNSVVSSEVGDLESVGIDLKSGDLINAWIEFDGSSKGLSVWVSYSNLKPKDPVLSTSLDVDMYLSDFMYVGFSGSTQGSTEIHRIEWWSFGSSFDVAAGAAPPPPPATSLMNPTANVVKSAPPSPAPTNSEEKDSKSKSSCHNGLCKQNLGAVAGVVSAGAFVLAIFAGALIWFYSKKVKRVNKFDSLGPEIIKMPKQFTYKELKSATKCFNANRIIGHGAFGTVYKGVLPKNRDNVAMKRCSHSSQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWSHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATEKTDVFSYGAVVLEVASGRRPIERDGNGGGKGGISCNLVEWVWSLHREGRLQLAADARLEGEFDEAEMRRVLLVGLACSHPDPLARPTMRGVVQMLVGEAEVPIVPRTKPSTGFSTSHSYLLMSLQDSVSDCDGIITISTSTSENSFNLGDIV 699
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium2079g00029 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Vium2079g00029 699 CDD STKc_IRAK 375 642 - -
Vium2079g00029 699 FunFam L-type lectin-domain containing receptor kinase VIII.1 445 660 - -
Vium2079g00029 699 FunFam L-type lectin-domain containing receptor kinase VIII.1 333 444 - -
Vium2079g00029 699 CDD lectin_legume_LecRK_Arcelin_ConA 20 252 IPR001220 GO:0030246
Vium2079g00029 699 SUPERFAMILY Protein kinase-like (PK-like) 351 668 IPR011009 -
Vium2079g00029 699 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 253 IPR013320 -
Vium2079g00029 699 SMART serkin_6 369 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2079g00029 699 MobiDBLite consensus disorder prediction 259 298 - -
Vium2079g00029 699 PANTHER - 43 652 - -
Vium2079g00029 699 Gene3D Transferase(Phosphotransferase) domain 1 445 648 - -
Vium2079g00029 699 FunFam L-type lectin-domain containing receptor kinase VIII.1 18 260 - -
Vium2079g00029 699 Gene3D - 18 259 - -
Vium2079g00029 699 Pfam Protein kinase domain 370 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2079g00029 699 MobiDBLite consensus disorder prediction 269 288 - -
Vium2079g00029 699 Gene3D Phosphorylase Kinase; domain 1 333 444 - -
Vium2079g00029 699 ProSitePatterns Protein kinases ATP-binding region signature. 375 398 IPR017441 GO:0005524
Vium2079g00029 699 Pfam Legume lectin domain 21 254 IPR001220 GO:0030246
Vium2079g00029 699 ProSiteProfiles Protein kinase domain profile. 369 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium2079g00029 Vium-Chr2079 320928 323920 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2079g00029 8 681 Receptor kinase-like Gene Family AT3G53380 68.367 0.0 910
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium2079g00029 Pkinase 6.9e-50 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2079g00029 - - gmx:100793157 1171.38