Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2079g00020 ATGACCTTGGAGGGGATTTTCATTGAGCCTACTTCAACCACTGCTCCTGATCTTTCTCTTCACATAAGCCCCCCAAGCATCTCCTCTTCCTTAATTTCCAATACCAACAACATCATCAATTATGAACCCCAACCTAGTTTCCTTTCAAGGACTGTGTCTCAAGCCCACACAGAACTCTCTCTTGGAAGAAATTTCACTTCGGCAAGGGAAACACCACCACCAACACCAACTCCAACACCACACAACCCTTATTATCCAACCCAAACCCAAACCCAAACCCATTTCCATCATCTTCTCCACAGCAGCAGCAGCAGCACTACTACTACTAGTAATATTCCAACAAGTGTTCCTACAAGTGCCAACACTCCCTTGAATCACATAAACTATGGAGTTTCATTGCTTGATGTATCATCATCAGACGGCTTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCGTTCCCTTTTGTGGCCATGGACCATGCTAGAGACAACAAGGATCCTCATACCAAGATGTGCTTGTATCATCACATGCCTTCTTACCCATCTCTCTCTTCCTCGTGTTCCTCTCTGTGCTCCACAGCCGCTCCTTCTTCTTCGCCTTCGCCTTACTTCGTGGATCCCATGTCCTTCTTGAACAACGCTTCCACCGTGGGGTGTAGGACAGCCACTGCCACAAGGTTTAATGGGTTTTCCGGCGATGCTTTCAAATCTCATCCATTGCACCAATATGGGGTAGGCTCTTCAGAAGCCTCTTCGGGGTTCATGAGATCAAGGTTTTTGTCTAAGCTTCCCAACAAGAGGAGCATGAGAGCACCCAGAATGAGGTGGACAAGCACCCTCCATGCTCGATTTGTCCATGCGGTGGAGCTTCTCGGAGGCCATGAAAGAGCTACTCCAAAATCAGTTCTTGAGCTCATGGATGTGAAGGATCTAACATTAGCTCATGTGAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCATCTTCAGGCCATTCAGATGGGTCTGGAGAGGATGACTTATCTCCTATTGGCAGCACCGCCGATCGGGGCAGTCTCCGGCAATTTCCCAGCCACAGAGGGCGGCCGGATTGGGTGGCGCAACAAGACATGGACTACTCTTCCACCACCACTCTTTGGAGTAATTCTTCAAGTTGTGGAGAATCGCGACAAAGAACAACTTCTAACGACATAGATGGTCTGAGATCACCTATTCTCCAGTCACAAACAATATCAGGAGCTCATCAAATTCAGGAGTGTGATTCAACACAACAGAAGAACAACATGGGAGGTTCTAATTTGGAGTGCAAGAATCCAAGCTTGGAATTCACATTAGGAAGACCACATTGGGATGGCAAAGAGCAAGCGTAA 1398 0.4742 MTLEGIFIEPTSTTAPDLSLHISPPSISSSLISNTNNIINYEPQPSFLSRTVSQAHTELSLGRNFTSARETPPPTPTPTPHNPYYPTQTQTQTHFHHLLHSSSSSTTTTSNIPTSVPTSANTPLNHINYGVSLLDVSSSDGLRPIKGIPVYHNRSFPFVAMDHARDNKDPHTKMCLYHHMPSYPSLSSSCSSLCSTAAPSSSPSPYFVDPMSFLNNASTVGCRTATATRFNGFSGDAFKSHPLHQYGVGSSEASSGFMRSRFLSKLPNKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGHSDGSGEDDLSPIGSTADRGSLRQFPSHRGRPDWVAQQDMDYSSTTTLWSNSSSCGESRQRTTSNDIDGLRSPILQSQTISGAHQIQECDSTQQKNNMGGSNLECKNPSLEFTLGRPHWDGKEQA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2079g00020 465 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 463 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vium2079g00020 465 MobiDBLite consensus disorder prediction 433 448 - -
Vium2079g00020 465 SUPERFAMILY Homeodomain-like 272 328 IPR009057 -
Vium2079g00020 465 MobiDBLite consensus disorder prediction 433 465 - -
Vium2079g00020 465 Gene3D - 274 331 - -
Vium2079g00020 465 MobiDBLite consensus disorder prediction 332 409 - -
Vium2079g00020 465 NCBIfam myb-like DNA-binding domain, SHAQKYF class 275 328 IPR006447 GO:0003677
Vium2079g00020 465 FunFam Myb family transcription factor 273 331 - -
Vium2079g00020 465 MobiDBLite consensus disorder prediction 61 88 - -
Vium2079g00020 465 MobiDBLite consensus disorder prediction 378 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2079g00020 Vium-Chr2079 191955 197778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2079g00020 1 462 G2-like Transcription Factor Family AT5G16560 39.679 9.55e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium2079g00020 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2079g00020 - - gmx:100796325 602.053