Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2079g00013 ATGAAACCAAACTTTGATCTTGAAGTTGAGGCACATGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTTTCTATTCAAGAAACCTCTATAGGTCCTTGTAGTGACAGCCTCACTAACATTTCCCACACCACAAATCCAATTGGGAGTCATCCTAATTCAGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAACAGTGAGCCAGGGGGAAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGCGAGAGCAGCAATGAACCTGCTTCTCAAACCACAGCAGCGACCATATCACGAGTCTTCTCTTGCAATTACTGTAAGCGCAAATTTTTCAGCTCTCAGGCTCTTGGTGGACACCAGAATGCCCACAAGAGAGAAAGAACATTAGCAAAAAGGGCTTTGAGAATGGGATTTTTCTCTGAAAGGTATGCCAATCTAGCATCTCTCCCTCTTCATGGTTCCTTTAGGTCCTTAGGAGTAAAGGCACACTCTTCACTGCACCATGGCTTCTCACCAACAATGAGGCCTCCTGAGATAAAAAGCAACGCAAGATTTGATCAAGGGTATGTTGGCATCCCAATATTCTTGGAAGATGATGAGTCAGATTTGTTGTGGCCGGGTAGTTTTCGTCAGGTTGTCGAGGCTGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCAGATTTGAGTTTTACTGGGGTTAATCCACCTGTAGACATAGAGAACTCAACACCAGATTTGACTTTGAAACTTTGA 774 0.4289 MKPNFDLEVEAHAEYESEVSSQVASNVSIQETSIGPCSDSLTNISHTTNPIGSHPNSDAISLDLTLNFKNSEPGGRDSIGFSFSSTSESSNEPASQTTAATISRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYANLASLPLHGSFRSLGVKAHSSLHHGFSPTMRPPEIKSNARFDQGYVGIPIFLEDDESDLLWPGSFRQVVEAGDSHQNFILTGSSDLSFTGVNPPVDIENSTPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2079g00013 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Vium2079g00013 257 FunFam Zinc finger protein 2 83 152 - -
Vium2079g00013 257 Gene3D Classic Zinc Finger 84 149 - -
Vium2079g00013 257 MobiDBLite consensus disorder prediction 79 98 - -
Vium2079g00013 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 55 183 IPR044246 GO:0009788
Vium2079g00013 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Vium2079g00013 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2079g00013 Vium-Chr2079 167246 170594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2079g00013 88 257 C2H2 Transcription Factor Family AT1G66140 51.741 3.07e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2079g00013 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2079g00013 - - gmx:100794851 475.322