Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2079g00011 ATGGTGTTGTCGTGGACCAAAGGGAGAGTGTTCCGGCGTGCTCGGAAGGGGAAAGAGTTGAGTTCCGGTAGCGATTTGGAGATAGAGATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAAGACCCCGTGACGATGTCCACGGGGATAACCTACGACAGAGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACCTGCCCGGTTACGAAGACGGAGTTGAACAGCTTCGAGATGATCCCGAACCACTCCATTAGGAGGATGATTCAGGATTGGTGCGTGGAGCACCGTTCCTACGGGATCGAACGGATCCCCACTCCTCGGATCCCGGTGTCTCCGTACGAGGTTGCTGACACGTGTACGAAGATCCTGTCGGCGGCGCAGCACGGGGACGAGAACAAGTGTGTGGAGTTGGTGAGGAAGATTAAGGCGTGGGGGAAGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGTCAACGGTGCTGCTCTAGCACTGGCTAATGCGTTTAACATTTTCTCACGTGGGGTGGTTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCCTTGACGTGGATGCGTCCTCTTTCCGAAGATGGTAGATCCGTGTTGGGGTCAGTGAGTTCTATTGGTTGCATGGTTTGGTTCATGAATGGTAAACAATTGGCGACAAGGCAGAACGCTGCTTTGTTGCTGAAGGAAATGCGTGTTGAGGCGTTGGTGAAATGTGAAGGGGTTTTGGAAGCTTTGGTTAACATGGTTAAGGAGCCAGCCGGTAGTGCTTCCTCAAAGGCATGTTTATCAACGATTTTTAAGTTGGTTAATTCATCAATGAGTAATAGGGGTAGGAGTTGCGAGAGATTGGTGGAGTTGGGTTTGGTTTCGGTGTTGTTGGAGGTTCTTGTTGATGCGGAGAAAGGGGTGTGTGAGAAGGCTTTGGGGGTATTGGATTGTCTTTGTGATTCTAAACAAGGGTTGCAAATGGCTAAAAGTAATGCTTTGACTTTGCCTGTTGTGATTAAGAAGCTTTTGAGGGTGTCCGAGTTGAGTTCCAGCTTTGCTGTTTCGGTTCTTTGGAAGGTTTGTGACAAGACAGAAGAAGAGATGTTGGTCGAGGCTCTTCAAATTGGAGTATTTCATAAACTCCTTGTTTTGTTGCAAGTGGGTTGTGCTGAGGGCACCAAAGAGAAAGCTACGGAGTTGTTGAAATCATTGAATGGTTGCAGGAGCAAAGCTGAGTGTGTGGACTCCTCCTTGGATTTCAAGCACTTGAAGAAACCCTTCTAA 1308 0.4962 MVLSWTKGRVFRRARKGKELSSGSDLEIEIAIPTHFRCPVTLDMMKDPVTMSTGITYDRDSIEKWIESGNRTCPVTKTELNSFEMIPNHSIRRMIQDWCVEHRSYGIERIPTPRIPVSPYEVADTCTKILSAAQHGDENKCVELVRKIKAWGKESERNKRCIVVNGAALALANAFNIFSRGVVEKNVVVLDEILGALTWMRPLSEDGRSVLGSVSSIGCMVWFMNGKQLATRQNAALLLKEMRVEALVKCEGVLEALVNMVKEPAGSASSKACLSTIFKLVNSSMSNRGRSCERLVELGLVSVLLEVLVDAEKGVCEKALGVLDCLCDSKQGLQMAKSNALTLPVVIKKLLRVSELSSSFAVSVLWKVCDKTEEEMLVEALQIGVFHKLLVLLQVGCAEGTKEKATELLKSLNGCRSKAECVDSSLDFKHLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2079g00011 435 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Vium2079g00011 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Vium2079g00011 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Vium2079g00011 435 Gene3D - 123 421 IPR011989 -
Vium2079g00011 435 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Vium2079g00011 435 SUPERFAMILY RING/U-box 27 108 - -
Vium2079g00011 435 CDD RING-Ubox_PUB 33 85 IPR045210 -
Vium2079g00011 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Vium2079g00011 435 SUPERFAMILY ARM repeat 126 409 IPR016024 -
Vium2079g00011 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2079g00011 Vium-Chr2079 116454 118136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2079g00011 24 435 U-box Gene Family AT5G37490 44.630 1.15e-119 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2079g00011 - - gmx:100795913 718.768