Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2079g00010 ATGTCTTTTGCTCTCATCGAAGCTTGCAAGAAGCGAAAACGATGGCCAAAATTTTTCAGGTTTCATTCATTCGGTGACCCTGGTATCCCAATTGTACCTTTGGGTACTTTCCGCGATAACGTTCGGGTTTTCCTTCAAGAAGCTGGAGAACCTGAAGATTATAGTGTCTCCGGGAATCCCCTATGGTGTACCCTTCTCATCCATGATAAGTCCAACGTAATGGCTCCTCTTTACACCGTCGAAGAGCACGTCTACCACTCTTCGCACCCCTTCTGCGATCACTGCCGCTGCGTAGGTTGGAGTGGCCATTTTGTATCAAAGAGAAGGTATCATTTTATAATCCCGATGGACAGTGGGTGGCATAGGCCCTTAGATGAAGATTCTATAGATAGTCAGAGGCATCTGTTGCATGGGGTGATTCATTGCAATGGATATGGCCATTTGCTCTGTGTAAATGGCATTGAAGGAGGTTCCAAGGTTCTTAGTGGCAGAGAGATTATGGATCTATGGGATAGGGTATGTACCAACCTCCGAGTAAGGAAAGTTGCAGTTGAAGATGTTTCGTGTAAGAGGTCTATGGACCTTCGCTTACTTCATGGAGTCGCCTATGGACACTCCTGGTTTGGCAGATGGGGTTATAGATTTTGCCGTGGAAGCTTTGGAGTGACAGAATCAGACTACAATGAAGCAATGACAACGCTTGGCTCCTTGGAGCTAGACATGATTGCAAAAGATTTGAGTAAGACAAAGTACAACAAAGAAATCAAACAAATGATTCGGTGCTATAGAGATATGAGTGAGACTCATATTATCTCACTCAGGGATCTTCTAAGGTTTATGCTTACCGTAAAGTCTTCCCGTGCTCCAGCGCCTAAGACAACAGTCTCCTATTCTGCCGCCGCCGCAGCTGCTGATTCTACCTGTTCAGCATTAATGTCAAGAAATTCAACCAAACACACTCTTTCAACCAGATCAAATTCCATGAAGGAGAAATCTGTTAGGTATAAGAAGTTCAGCAATGCAGTGACTAACATGGATAGTAGGTGGCCCACAAGAAGGCTAGAGTTTGCCGCTCAAGTGATTGTGGACGCACTGAAAGAAAACAAGGCTGTTAAACCAGGCACAGGTGGGATGGCAAGGCAAGATGTGAGAGATGCAGCTAGGCTTCACATTGGTGACACAGGTTTACTTGATTATGTACTTAAATCACTCAACAATGTCATTGTTGGAAACTATGTTGTTCGTCGGATGGTGAATCCGTCAACTAGAATTCTAGAGTACACAATTCACGATCTTGGCAACGGGTACAAAGCCCCTGAATTGGAGACTGAGGTGATGGCTTATGTAGATCAACAAGTTGTAGAGTCATCTTGGGTGCCTGGTAACGATGTTTACTGCGACGTACTGTTTTTGTACAAGAATGTGCTATTGGGCTACCCCGATTCAGAAATAGTGGACTTGGCCATTCAGACAATTCTAGACAGCAGATATTTCGTAAAAGAGTGGGCAGAGAGGGATGAAATAGAGGAGCAGTCATTGACATTCATTTGCCGACTGCAACCAAATTTTGTGGACAAGAAGTATGAGTTGAAAGGTCTACCATGTGGTGAGGTTGTGGTGGTTCCACTGCATGCAACGGTTGGAGACTTGAAGAGGGCTTCTGAGGCTGCTCTTAGGGACACTTACTGCATTGCAGAAAGGCTTATAGTGACAGACATTAAACAACTTATGGGAGTAAGTGATGAGGAAGTGCTGTTTGGACTAATCCAGTCCGGTGTAGAACTTTGTGTGAGGGGAATTGCCATTGATTTGTGCACCAATTTGAAGTATCAGGGTGGATCTGACAACTGGAAGGTGAGATGCGAGTGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAAGTGTGGCAGCATACTCGCTGCTGTGGCATAGACGATTCTGAGACAGTGCCACCACTTTTTGTCTGCACTGGTTGCTGTGATTCACTCGTACCCTCCAGGACCGAATCATCCTTTTGTTCAGATTCTCCTGATTCTTTTCTCATTCCAGCAGACCCTTCTCTTATACTAGAATACGAGTATATGCGTGATTAA 2112 0.4489 MSFALIEACKKRKRWPKFFRFHSFGDPGIPIVPLGTFRDNVRVFLQEAGEPEDYSVSGNPLWCTLLIHDKSNVMAPLYTVEEHVYHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDSGWHRPLDEDSIDSQRHLLHGVIHCNGYGHLLCVNGIEGGSKVLSGREIMDLWDRVCTNLRVRKVAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTESDYNEAMTTLGSLELDMIAKDLSKTKYNKEIKQMIRCYRDMSETHIISLRDLLRFMLTVKSSRAPAPKTTVSYSAAAAAADSTCSALMSRNSTKHTLSTRSNSMKEKSVRYKKFSNAVTNMDSRWPTRRLEFAAQVIVDALKENKAVKPGTGGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHDLGNGYKAPELETEVMAYVDQQVVESSWVPGNDVYCDVLFLYKNVLLGYPDSEIVDLAIQTILDSRYFVKEWAERDEIEEQSLTFICRLQPNFVDKKYELKGLPCGEVVVVPLHATVGDLKRASEAALRDTYCIAERLIVTDIKQLMGVSDEEVLFGLIQSGVELCVRGIAIDLCTNLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLVPSRTESSFCSDSPDSFLIPADPSLILEYEYMRD 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2079g00010 703 SUPERFAMILY FYVE/PHD zinc finger 610 671 IPR011011 -
Vium2079g00010 703 ProSitePatterns Zinc finger PHD-type signature. 621 665 IPR019786 -
Vium2079g00010 703 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 676 - -
Vium2079g00010 703 SMART PHD_3 620 666 IPR001965 -
Vium2079g00010 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 670 IPR013083 -
Vium2079g00010 703 CDD PHD_MMD1_like 621 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2079g00010 Vium-Chr2079 106528 109464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2079g00010 10 671 PHD Transcription Factor Family AT5G22260 33.569 4.76e-120 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2079g00010 K26271 - gmx:100797388 1239.17