Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2079g00008 ATGACGGGGAAGAAGAATGTGAAGGCGGCGTCAAAGGAAGAGGAAGAGGAAGGGAGGCAAACGACGTCATCTTCGACACCGCTTTCTCATTCGCGGTCGTTGTCTTCGTCGTCGTCGTCTTCCGATGAGAAAGAGTACGAGGTGCAGGACCTGCGGGACCGATTGAAATCTTCGAGAGGGAGCCGGTTCAATCTGATAGAGAATGAGTTGGAACTCAACTCAAGATGGAGCAAGTTCAGTCGCCAAGCTCTTTTCCATGGAATCTGTGGCTTCTCCGAGGACTTCGTCATTCATCCTGATAACAGGTGGTACCGGGCATGGACAAAATTCATATTGCTATGGGCAGTGTATTCATCCTTCTTCACCCCAATGGAGTTTGGATTTTTTCGTGGCTTGCCTGAGAATCTCTTTATTCTGGACATCATTGGACAACTAGCTTTTCTCGTCGACATTTTCTTGCAATTCTTTGTTGCTTACAGAGACAGCCAGACCTACCGTATGGTCTACAAGCGAACACCTATAGCTCTGCGGTATCTAAAATCTGACTTCATATTCGATCTTCTTGGGTGTATGCCATGGGACGTCATCTTCAAGGCTTGTGGACGAAGAGAGGAAGTGAGGTACCTTTTGTGGATCAGATTATACCGGGTGCGGAAAGTCACAGATTTTTTCCACAAGTTGGAGAAGGACATACGCGTCAATTACATTACTACCAGGATTGTGAAACTGATAGTAGTCGAACTCTACTGCACCCATACAGCAGCCTGCATTTTCTACTTTTTGGCTACTACTCTACCGGAATCACAAGAAGGATACACATGGATAGGAAGTTTAAAATTGGGTGACTATAGTTATTCGCATTTCAGAGAAATTGATCTTTGGAAGCGCTACACAACATCTCTGTATTTCGCTATTGTTACTATGGCAACAGTTGGCTATGGAGATATACATGCAGTAAATTTGAGGGAGATGATATTCATAATGATATACGTTTCATTTGATATGATTCTCGGTGCCTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGGTCAAAGACTGAAAAGTTTAGAGACAAGATGACAGACCTATTGAAATATATGAACAGAAATAAGCTTGGAAGGGATATCCGTGAACAAATTAAGGGCCATGTACGCTTACAGTATGAGAGTAGCTACACTGAGGCTGCTGTCATTCAGGATATCCCTATTTCTATTCGAGCTAAGATATCCCAAACATTATACTTGCCATACATCGAAAATGTTTCTCTTTTTAAAGGATGCTCTGCAGAATTCATCAACCAGATTGTTATTAGGATCCATGAGGAGTTCTTTCTTCCAGGGGAAGTTATAATGCAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGAGTGCTGGAGGAAGTAGGTACAGCTGAAGATGGATCTGAAGAAACTGTTTCACTTCTGCAGCGTCACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAACCATATACTGTCCGAGTTTGTGAACTGTGTAGACTCTTGCGACTTGATAAACAATCATTTACAAATATCCTAGACATATACTTTTATGATGGAAGGAAAGTATTAAACAACCTTCTAGAGGGAAAAGAGTCTTTTCGAGGTAAGCAGTTGGAGTCAGACATCACACTTCATATTGGAAAACAAGAAGCTGAGCTTGCTTTGAAGGTCAATAGTGCAGCTTTTCATGGGGATCTACATCAGCTCAAAGGCTTAATTCGAGCTGGGGCTGATCCCAACAAAACAGATTATGATGGAAGGTCACCACTGCATCTTGCAGCGTCCAGAGGACATGAAGATATCACATTTTTCCTTATTCAAGAACGTGTAGATGTCAATATTAAAGATAACTTCGGCAACACGCCCTTACTTGAAGCAGTTAAGAATGGAAATGATCGGGTTGCTTCTTTACTTGTTAAAGAAGGGGCCTCAATGAAGATCGAAAATGCTGGTAGTTTTTTGTGTACAGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGACTTTTATCCAATGGCATGGATCCTAACTTAAAAGATTATGATTACCGAAGCCCTCTTCACTTAGCTGCAGCTGAAGGTTTATACTTCATGGCAAAGTTGCTATTAGAAGCAGGAGCTAGTGTTTTTACCAAAGACAGATGGGGAAATACCCCGCTTGATGAAGCCCGGATGTGTGGAAATAAGAATCTGATCAAGTTGCTTGAAGATGCAAAATCTGCTCAACTGTTAGAATTCCCGTATTCCTCCCAAGAATTTACAGATAAAATGCACCCAAAGAAGTGCACAGTCTTCCCTTTCCACCCGTGGGATCCGAAAGATAATAGAAGACATGGAATTGTACTATGGATTCCACACTCCATCGAAGAGCTAATCAAATCAGCGGCAGAACTAATAGAATTTTCTGGGGATTCTTGTATTTTATCAGAAGATGGTGGTAAAATTACTGATGTGGACATGATTAAGGATGATCAGAAGCTGTACTTAGTCCATGAAACACATTAA 2553 0.4132 MTGKKNVKAASKEEEEEGRQTTSSSTPLSHSRSLSSSSSSSDEKEYEVQDLRDRLKSSRGSRFNLIENELELNSRWSKFSRQALFHGICGFSEDFVIHPDNRWYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQLAFLVDIFLQFFVAYRDSQTYRMVYKRTPIALRYLKSDFIFDLLGCMPWDVIFKACGRREEVRYLLWIRLYRVRKVTDFFHKLEKDIRVNYITTRIVKLIVVELYCTHTAACIFYFLATTLPESQEGYTWIGSLKLGDYSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLLKYMNRNKLGRDIREQIKGHVRLQYESSYTEAAVIQDIPISIRAKISQTLYLPYIENVSLFKGCSAEFINQIVIRIHEEFFLPGEVIMQQGNVVDQLYFVCHGVLEEVGTAEDGSEETVSLLQRHSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKVLNNLLEGKESFRGKQLESDITLHIGKQEAELALKVNSAAFHGDLHQLKGLIRAGADPNKTDYDGRSPLHLAASRGHEDITFFLIQERVDVNIKDNFGNTPLLEAVKNGNDRVASLLVKEGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHLAAAEGLYFMAKLLLEAGASVFTKDRWGNTPLDEARMCGNKNLIKLLEDAKSAQLLEFPYSSQEFTDKMHPKKCTVFPFHPWDPKDNRRHGIVLWIPHSIEELIKSAAELIEFSGDSCILSEDGGKITDVDMIKDDQKLYLVHETH 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2079g00008 850 ProSiteProfiles Ankyrin repeat region circular profile. 634 665 - -
Vium2079g00008 850 MobiDBLite consensus disorder prediction 21 42 - -
Vium2079g00008 850 Gene3D Helix hairpin bin 352 408 - -
Vium2079g00008 850 ProSiteProfiles Ankyrin repeat region circular profile. 601 633 - -
Vium2079g00008 850 Pfam Cyclic nucleotide-binding domain 445 529 IPR000595 -
Vium2079g00008 850 SUPERFAMILY Voltage-gated potassium channels 98 350 - -
Vium2079g00008 850 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515
Vium2079g00008 850 SMART cnmp_10 425 543 IPR000595 -
Vium2079g00008 850 SUPERFAMILY cAMP-binding domain-like 353 542 IPR018490 -
Vium2079g00008 850 PRINTS EAG/ELK/ERG potassium channel family signature 140 150 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2079g00008 850 PRINTS EAG/ELK/ERG potassium channel family signature 249 259 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2079g00008 850 PRINTS EAG/ELK/ERG potassium channel family signature 297 314 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2079g00008 850 PRINTS EAG/ELK/ERG potassium channel family signature 341 350 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2079g00008 850 Pfam Ion transport protein 105 350 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium2079g00008 850 Gene3D - 107 351 - -
Vium2079g00008 850 ProSiteProfiles Ankyrin repeat profile. 698 730 IPR002110 GO:0005515
Vium2079g00008 850 Gene3D Jelly Rolls 409 546 IPR014710 -
Vium2079g00008 850 CDD CAP_ED 425 539 IPR000595 -
Vium2079g00008 850 Pfam Ankyrin repeats (3 copies) 576 664 IPR002110 GO:0005515
Vium2079g00008 850 Pfam Ankyrin repeats (3 copies) 671 751 IPR002110 GO:0005515
Vium2079g00008 850 FunFam Potassium channel SKOR 105 350 - -
Vium2079g00008 850 ProSiteProfiles KHA domain profile. 777 850 IPR021789 -
Vium2079g00008 850 MobiDBLite consensus disorder prediction 1 47 - -
Vium2079g00008 850 FunFam Potassium channel KAT2 413 550 - -
Vium2079g00008 850 SUPERFAMILY Ankyrin repeat 574 753 IPR036770 -
Vium2079g00008 850 FunFam Gated outwardly-rectifying K+ channel 640 766 - -
Vium2079g00008 850 Pfam KHA, dimerisation domain of potassium ion channel 776 845 IPR021789 -
Vium2079g00008 850 SMART ANK_2a 665 694 IPR002110 GO:0005515
Vium2079g00008 850 SMART ANK_2a 731 760 IPR002110 GO:0005515
Vium2079g00008 850 SMART ANK_2a 566 597 IPR002110 GO:0005515
Vium2079g00008 850 SMART ANK_2a 601 630 IPR002110 GO:0005515
Vium2079g00008 850 SMART ANK_2a 698 727 IPR002110 GO:0005515
Vium2079g00008 850 SMART ANK_2a 634 663 IPR002110 GO:0005515
Vium2079g00008 850 PRINTS Ankyrin repeat signature 714 728 IPR002110 GO:0005515
Vium2079g00008 850 PRINTS Ankyrin repeat signature 602 617 IPR002110 GO:0005515
Vium2079g00008 850 Gene3D - 667 760 IPR036770 -
Vium2079g00008 850 Gene3D - 559 666 IPR036770 -
Vium2079g00008 850 ProSiteProfiles Ankyrin repeat region circular profile. 698 730 - -
Vium2079g00008 850 ProSiteProfiles Ankyrin repeat profile. 665 697 IPR002110 GO:0005515
Vium2079g00008 850 ProSiteProfiles cAMP/cGMP binding motif profile. 425 545 IPR000595 -
Vium2079g00008 850 ProSiteProfiles Ankyrin repeat profile. 634 666 IPR002110 GO:0005515
Vium2079g00008 850 PANTHER POTASSIUM CHANNEL AKT1 71 847 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2079g00008 Vium-Chr2079 68086 80008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2079g00008 644 751 Ion Channels AT5G37500 32.609 1.67e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2079g00008 K21867 - gmx:100814385 1555.81