Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2079g00004 ATGGATGCTCCGGACAAGAAGAAGGCATTGTCTCGTGTTAGCTTTAGTTTTAAGAAGAAAGAGAAGTACCCTGTATTCCCCCTAGTGAGGTATAATGAACTTCGGCAGCCTGTTTGCCAGGTATGTGGTGTGGTTATGTTGGAGCCTATACGTTCACACCTGGCTTCTCCTGAGCATCACGAGGAAATGAAAAAACGGAATACTAATACTACTGCATCGGCTGACCATAACAATGCAAAGCCACTTACTGGTACCAACTCTCCCAAGGCTAATAGAGAACAACCTCAAGATACAGAACACCAACTGCCAGAATGTTCACAAAATGTGCCTCAACATCAGTCACTGTCGACGCTTCCAAGAGATTTTTGTGATGACAGTGGTAAAATAAGGACAAGATCTGTTTCAAAAGTAACCGAAATGATGGACCCTCCTAAAGATCAAGAATACGGGGAATCCAACAACGGCTGTGTAAAGGTGAAATCCAAGATTTCACATTCCATCCATGAATCATTTACATCTTCAAGACGTGGAAGACCACGAAAAACGAAGCCTACCAAGTTCATAATCAACCAGACTCCCAATCCCCCATCAACACCCCGGAGATCCAAAAGAATAAAGCATGTGGCAGATAGAAGTGCCGACCATGTGCCTGAAGCATCGTCATCTGAGGAATTATTGAAGGACAAACTAATTGCATTACTGAAGAGGCGTACTGCAGAGACTTCCCTAGTCAATGGCAAAGAGAGTTTCCAAGTAGATGGCAAAGAGAGTTCCCCAGTAGATGACAAAGAAGCCTCTTCGGATATCGACCCCTTAGTAATCTACAAAAGAAAAAGACTACCTCGGAAGCGGTATTATGGTCAAACGAGCAAGACTACAAAGAAAACTGCTCCCAGAAAGGTTCCAACTGCTGCAATTACTAGCTCTACTACTGGTTTACCCCCTCATCATGATCCTCCTGCAGCTGCTCCAGTCAATGTTGATACTCCTCACGTTGAAAATACAAATACTGCTGAGCCAATATTCAGTGAAAGACTTGTCGAAGAGGTGGAGAAGGTTAACCCTGCCCCAGCCAATGCACAAGAGCAGGTTGCTTCCAGCAAGGCTGAAGATTCTCCAGATCAAGTGGACCCAAAGGCTGATGAAGTCTCTTCTGGAAACACCCCACTCGATGTAGAAGCCATAGACAAAATGATCGAAGATGACCCTTTGAGTGCCATTGAAAATATCCTGACGGGGAAGGTTTCCATTTTTTCCAAAACTCCACAATCTGCTACTCTGTCAGAACCATCAGAAGCTCAAAGCTCCCCTACAGATATTCTGTCAAAAGAGCTAAAAGACTTGATGCAGACGTTCAGCTTAGGTGATTTTGTTACAGACTATGAACAATTATCAAAAGTCCTACTTATTCTTGAAGAGTTGCAGAAGAATGAGAATTTACTTTCTCTTGCCCAGCAAACATTCATGAGGACATTCAGACTCTTCTTCAACAGTGCTGTTGCTCACCACAAAGAATCTTGTACAGTTGGAATAAAGAAAGTCAAGTTGAACCGAGCTAAAGAAGATATACTTCACAAACTGCAAGAAACTAAACATGCACAAGAGCAAATCACAACGTCCATTTCAATTGCCAACATCAGGGTCAATGAAATATCTTCTTCTATTGAACAACTTGAAGAACAATTATCTAAACTGAAGGAAGAGAGAGAGACCTTTCAGTTGGCTATAAATGAAGGCGAGAAACAAAGGGAGACATTGAAGAATGATAGCATCTTATGGGCTCACCATACTAAAGACCTGGTTTTTGATCTTGCAGGCATTGAGGCAAAAGAAAAAGCCCTTCGACAGCAACTTGAAGCAGACAAAGATGCATATAACCAATTTAAGGCATCCTTTCCTTTTTAA 1905 0.4231 MDAPDKKKALSRVSFSFKKKEKYPVFPLVRYNELRQPVCQVCGVVMLEPIRSHLASPEHHEEMKKRNTNTTASADHNNAKPLTGTNSPKANREQPQDTEHQLPECSQNVPQHQSLSTLPRDFCDDSGKIRTRSVSKVTEMMDPPKDQEYGESNNGCVKVKSKISHSIHESFTSSRRGRPRKTKPTKFIINQTPNPPSTPRRSKRIKHVADRSADHVPEASSSEELLKDKLIALLKRRTAETSLVNGKESFQVDGKESSPVDDKEASSDIDPLVIYKRKRLPRKRYYGQTSKTTKKTAPRKVPTAAITSSTTGLPPHHDPPAAAPVNVDTPHVENTNTAEPIFSERLVEEVEKVNPAPANAQEQVASSKAEDSPDQVDPKADEVSSGNTPLDVEAIDKMIEDDPLSAIENILTGKVSIFSKTPQSATLSEPSEAQSSPTDILSKELKDLMQTFSLGDFVTDYEQLSKVLLILEELQKNENLLSLAQQTFMRTFRLFFNSAVAHHKESCTVGIKKVKLNRAKEDILHKLQETKHAQEQITTSISIANIRVNEISSSIEQLEEQLSKLKEERETFQLAINEGEKQRETLKNDSILWAHHTKDLVFDLAGIEAKEKALRQQLEADKDAYNQFKASFPF 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2079g00004 634 Coils Coil 541 589 - -
Vium2079g00004 634 MobiDBLite consensus disorder prediction 55 129 - -
Vium2079g00004 634 MobiDBLite consensus disorder prediction 288 324 - -
Vium2079g00004 634 MobiDBLite consensus disorder prediction 55 69 - -
Vium2079g00004 634 Coils Coil 604 624 - -
Vium2079g00004 634 PANTHER UNCHARACTERIZED 1 633 IPR040050 GO:0003676|GO:0005681|GO:0008270
Vium2079g00004 634 MobiDBLite consensus disorder prediction 70 92 - -
Vium2079g00004 634 MobiDBLite consensus disorder prediction 355 388 - -
Vium2079g00004 634 MobiDBLite consensus disorder prediction 290 314 - -
Vium2079g00004 634 MobiDBLite consensus disorder prediction 185 199 - -
Vium2079g00004 634 MobiDBLite consensus disorder prediction 100 120 - -
Vium2079g00004 634 MobiDBLite consensus disorder prediction 164 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2079g00004 Vium-Chr2079 40301 51662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2079g00004 1 63 C2H2 Transcription Factor Family AT3G02860 49.254 1.77e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2079g00004 - K13104 vun:114194212 1066.99