Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2077g00001 ATGACTCTTCTCTCCAAAAGCATGGACAATGGTTGCTTCTCTTCGCCACGCCATGAGGCTTTTCCAGCTGGTCTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGTTTGTATGAAGTGACTACATGTTGTTTAGCAACAGAGGCTCTGAAAAAACTTCGAGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGCTTCAAACTTCTTGAGCAAGTTGGACTTGAGATGGATCTTCCTGTCATCATGATGTCTGTTGATGGAGAAACCAGTAGAGTAATGAAAGGTGTCCAACATGGTGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAGCACGTCTTTAGAAAAAGGATGCATGAAGCGAGAGATTTTGAAAGCCATGAGGGTTTTGAGGCCCTTCACTTGCTGATGAATGGATCAGATCAGTCCGATGATGGTAACATCTTTGCCGTAGAAGAAATTACCTCAATAAAGAAAAGAAAAGATGCAGATAGCAAGCACGATGACAAAGAATTTGGAGATCATTCTCCCACAAAGAAAGCTAGGGTAGTTTGGTCTGTGGATCTTCACCAGAAATTTGTCAAAGCCGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTTGATTTGATGAGTGTTCCCTGGTTAACCAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCGTCAAGTGGAGTAAAGCATTCGGATTCTTCTTCAAAAGATCCAGGAAGTTTTAGTTTTCTAAACACTGCAAGCAACAAGCAACAAAGTGATGTTGTCATAGACAGCTTCAGTCATTCAGATGGAAGTTTACTACAGATGGATGCTCCAAGTCATGAAGGTGACCTCAAGAGAATTTTGTCAGAGCCTACAACCGAAAAAAGAAGATCTTCACCAAAAAGTTCACAGATGAGCCTCAATCAACCTTTTTCATCTGTAGAATCATCAGAAGCAAGCCATGCAATATTTGATTGCACCATACAAACACAGTACTCTTGGGGTGAGTTTCCAAAAGGACCACTCAAAGAAGAACAGAAGACAACTGTTCAATTAGAGGATAGCTTCAGCCAGTTGCCATTACACGGTACACGGCATCACATTCAGGTTGATCAATCACAATCGATTGCTTCGATTAATTCTAATCCTTCTATAACAGAAGAAGAGGTTGCTCCCAGCTTAGACACCAAAACTTTATATGCTGGTTACAAGAGTGATTATGTGAGTCCTTTGAGTTCAATGGGAACTGTAGTTGACACCTTTCCTAAACAGTCCAAAAGCCTCATCCCTAATGATCAATCTCCAGAGCCCATTTTCACCTCAAATTTGGGATTGAAAACTGATGGATTTGATGTTGATTGCATTTCTGATCTGGATTTTTATCAAAGGAATCTATTATTGTGTGGTGATGCAGCTTCTGCATCTTTGGAAGAGGACCTGAATTTCTTTTTGCTGCAAACTGAATGGTACAACATGAATTTTGGGCAGCAGAATATAGATATATCAGAATGTTATGATCCAAGGCTTGTTGCTGAAGCCCCTGGCTACTTTTATGATTCTGCAGATTATTCATCCGTAGACCAAAGTCTATTCATAGCATGA 1737 0.4018 MTLLSKSMDNGCFSSPRHEAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFEALHLLMNGSDQSDDGNIFAVEEITSIKKRKDADSKHDDKEFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMSVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGVKHSDSSSKDPGSFSFLNTASNKQQSDVVIDSFSHSDGSLLQMDAPSHEGDLKRILSEPTTEKRRSSPKSSQMSLNQPFSSVESSEASHAIFDCTIQTQYSWGEFPKGPLKEEQKTTVQLEDSFSQLPLHGTRHHIQVDQSQSIASINSNPSITEEEVAPSLDTKTLYAGYKSDYVSPLSSMGTVVDTFPKQSKSLIPNDQSPEPIFTSNLGLKTDGFDVDCISDLDFYQRNLLLCGDAASASLEEDLNFFLLQTEWYNMNFGQQNIDISECYDPRLVAEAPGYFYDSADYSSVDQSLFIA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2077g00001 578 MobiDBLite consensus disorder prediction 343 357 - -
Vium2077g00001 578 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Vium2077g00001 578 SUPERFAMILY CheY-like 24 152 IPR011006 -
Vium2077g00001 578 MobiDBLite consensus disorder prediction 316 357 - -
Vium2077g00001 578 SMART REC_2 25 137 IPR001789 GO:0000160
Vium2077g00001 578 CDD REC_typeB_ARR-like 27 141 - -
Vium2077g00001 578 Pfam Response regulator receiver domain 27 136 IPR001789 GO:0000160
Vium2077g00001 578 Gene3D - 204 266 - -
Vium2077g00001 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 306 IPR045279 GO:0009736
Vium2077g00001 578 MobiDBLite consensus disorder prediction 324 342 - -
Vium2077g00001 578 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Vium2077g00001 578 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Vium2077g00001 578 FunFam Two-component response regulator 203 266 - -
Vium2077g00001 578 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Vium2077g00001 578 MobiDBLite consensus disorder prediction 269 294 - -
Vium2077g00001 578 Gene3D - 25 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2077g00001 Vium-Chr2077 9234 13903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2077g00001 19 273 Response Regulator Gene Family AT2G25180 53.731 4.16e-81 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium2077g00001 Response_reg 1.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2077g00001 K14491 - gmx:100778324 983.4