Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2074g00001 CATTTGGTTGAAAAGTTGAAGGAAAAATGCTCCAAGAAGAGAGATGAAATTGCAAGAATGTTGGAAAAGACATCACAAGTTAAGCAAATTAAGGAAAATTTAAACCAATCTGTGTCTATGGCAAAAAAAGAGGCATTTGGACTTGAGCGAGACTGCAAAAGCAAAACTAGCAACATACAGAAGATGGTACGACAACTTAAAATGCTTGAACAACAAGTACAGGATATTCACGAGCAGCATGCAAAAAATACTCAGGCTGAAGAATCTAACGTGGAGGAGAAACTGAAGGTGCTTAAAGATGAGGTTCATGCAGCTGAGTTAACCCTGAAGAGATTGAAAGAAGAAGATGCTTCTTTAATGGAGAGTATACGTAGGCAAAATGACGAAATCCAAAAGATAGCTGATAAGATTCATGATCATGAAAAAAATCACCATGGTACCATGCGCCGAATCCGTGATCTTCAACAACATCAAAGCAATAAGATTACTGTTTTCGGAGGAGCCAAAGTAATCAATTTGTTACAAATAATTGAGAGATACCACCGAAGGTTTAAAATGCCTCCAATTGGTCCAATTGGTGCCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTTGCCCTTGAATATGCTATTGGGAGATTGCTCAATTCTTTTATAGTGACTAATCATGCGGATTGTCGTCTTTTAAAACAATGTGCGAAGGAAGCTAACTATGGTCACCTTCAAATTATTATTTATGATTTTTCAATCCCAAGGTTGAAGATACCACAACATATGCTTCCTGATACAGAACATCCATCAATTCTTTCTGTCTTACAATGCGATAATCACACTGTGATTAATGTCTTAGTGGATCAGGGAAATGTTGAGAGGCAAGTGCTAGTCAAGGATTATGAAGTTGGGAAAGTGGTTGCCTTTGAGCGAAGGATCCAAAATTTGAAGGAGGTCTACACAGCAAATGGATGTAGAATGTTTTCTCGAGGTCCAGTGCAGACTGTTCTTCATCCAAATAAGAGGCAAAGAACTGGTCGTCTTTGTGGTTCTTTTGAAGATGAGATTGAGAAACTTCATGCTGAAGCATCTGATGAACAAAGGATTGCCAATGACCTTAAAAAAAATAAAAGAGAGGCAGAAGTCAAGCTTGAGGAACTTGACAAATATATGAGTTCTATTAAGAGACAATGTGTAAATGCAAGTAAAAGTTTTACTTCTAAGAAGCTAGCTTTGGAGGAAGAAATGCATCTGCACTCTGCTGAAAATAATGCAACGCCTTTGTCCTCTGTTGATGAGCTTGTTGAAGAAATTTCAGAGATCCAGAAAAAAATAGAAGAAGAACAAGTTTTGCTAGATGGCCTTCAGAAAAACGGGCTTGAAGCAGCAGGAAAAGTGGATGATCTTAAATTAGAATTTGACAAACTTTGTGAATCAGCGAATGGTGAAATTGCTGCCCTAGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAATGGGTTCAGCAAATAAGGCAAAGGATCATTATGAGGGTGTCATGAAAAACAAGGTCCTAATTGATATTGAGGAGGCAGAGGACCACTATCAGGAGCTTACAAAGAAGCGCAAGGAAAGTGTTGAAAAGGCTTCCATAATATGCTCTCAGAATGAACTTGATTCATTAGGAGGTTGTGATGGCAATACCCCAGAGCAAATCAGTGCTCAATTAGGAAGACTTAATCAGACACTAATGCGCGAGAGTCAAAGGTACTCGGAATCAATTGATGATCTTAGGATGCTGTATAAGAAAAAAGAGCGTAAGATTGCAAAAAGGCAGCAAGTTTACAGAACCCTTCAACAGAAATTGGATGTATGTATTTTTTGGTTTTACTTATTCTATCGATAA 1884 0.3795 HLVEKLKEKCSKKRDEIARMLEKTSQVKQIKENLNQSVSMAKKEAFGLERDCKSKTSNIQKMVRQLKMLEQQVQDIHEQHAKNTQAEESNVEEKLKVLKDEVHAAELTLKRLKEEDASLMESIRRQNDEIQKIADKIHDHEKNHHGTMRRIRDLQQHQSNKITVFGGAKVINLLQIIERYHRRFKMPPIGPIGAHLKLLHGNKWALALEYAIGRLLNSFIVTNHADCRLLKQCAKEANYGHLQIIIYDFSIPRLKIPQHMLPDTEHPSILSVLQCDNHTVINVLVDQGNVERQVLVKDYEVGKVVAFERRIQNLKEVYTANGCRMFSRGPVQTVLHPNKRQRTGRLCGSFEDEIEKLHAEASDEQRIANDLKKNKREAEVKLEELDKYMSSIKRQCVNASKSFTSKKLALEEEMHLHSAENNATPLSSVDELVEEISEIQKKIEEEQVLLDGLQKNGLEAAGKVDDLKLEFDKLCESANGEIAALEKAESELVEIEKEMGSANKAKDHYEGVMKNKVLIDIEEAEDHYQELTKKRKESVEKASIICSQNELDSLGGCDGNTPEQISAQLGRLNQTLMRESQRYSESIDDLRMLYKKKERKIAKRQQVYRTLQQKLDVCIFWFYLFYR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2074g00001 627 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 3 617 - -
Vium2074g00001 627 Coils Coil 52 79 - -
Vium2074g00001 627 SUPERFAMILY Smc hinge domain 141 311 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vium2074g00001 627 Coils Coil 3 23 - -
Vium2074g00001 627 Coils Coil 81 143 - -
Vium2074g00001 627 Coils Coil 514 541 - -
Vium2074g00001 627 Coils Coil 594 614 - -
Vium2074g00001 627 Coils Coil 478 505 - -
Vium2074g00001 627 Coils Coil 429 456 - -
Vium2074g00001 627 Coils Coil 354 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2074g00001 Vium-Chr2074 1244 11050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2074g00001 3 618 Structural Maintenance of Chromosomes family AT5G61460 50.162 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2074g00001 K22804 - gmx:100816916 959.903