Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2068g00023 ATGATTGCTTCCGTTCTAAGCTCTCCGTTTTCCCTATTTCTTCTCATTTTTCTCTTCTTCAGCCTTTCCACCTCACAATCCCAACTCTTGCTGCCTTCTTCTCCGCCCTCAGTTAAACCGGCCACCGCACTCGTCGCCGCCCTGGATGGTACCGTGTATTTGTTGGATAGTGATTCTGGAAGGGTTTTTTGGTCTTTTTCAACTGGATCTCCAATCTACTATTCCTATCATGCTCCCATCAATAACCCTAACCACAACTTCACCGCCTTCGTTGAATGTGGAGATGATTGGGAATTAATCGTCCACGACGCTCACTTGGGTAAAAAGAGACTATCGAAATCGATTGAAGAGTATGTTGCTTCTACCCCTATCAAGACAAAGGATGGAGCATCTGTATTTGGTCACAAGAGAACCACTATGTATGTAGTTAATGCTAAAACTGGAGGGCTATACCGAACCTACTCTGAACATGATCATGCTTCTAATGCGGTGTCGAGTTATGATGACCGGCTGCATGTTGCAAGTACGAAGGATAATGTTCTTGTTGATCCTGTACAGTTGAATCCGCCTGAGTACTTGCTTGAGATAACTAGGACGGATTATACTTTGCAATCCGTTGTTCCTGGTTCTGGAATAGTTTTGTGGACTATGAAAGTGGCTGAATTTAAGGCTGCATTGGTTTGTTCACATACTGAAAATCCTTCTGGAAGGATTTCATTAGATGCAGAGGATGGGTATGTTTTGGACGGTGGCTTAGATTTTGCCATGCCCTATGCATGTTGGGACATGAAACTGAATGAAGTATACCGCCAACGCAAGAAATTTTTGATAGAACCTGCTGACCCTGAGAGATTATCTGAGGTTTATGAAGAGGTTGATATGCTTCCGTTTCATAGTTCAGAGCTCATGCTTCCATCACAACCAGCTACTGATAAATTTGTTCTAGGTCGGGAGGGAATGCCGATGCTATCTTTGCCTATGCCAAATCCTTTGTCTTCTTTGCAACACAAAATTGGCTTCTATGAGGGCAATGATAATGTTCCTATGCTCCCTCGCTCTCTTATGGAGACCACTACAGAAGAAGTTGATCCAGGCAGGGTGATTAAATGGTCAAAAACAATACCTCTTGTATTATTTACCATCTTTCTTGGTTCTTTTATTATATATCATTCTCTTGTCTTTACCAATAAAGACCAGAACAGGGAGACAAATTCAAAAAGTCCACCTCCTAAGAAGAAGAAAGCTCGCAAGTCAATAAAGAACAACATTATTTCTGTCACACAGAATAAGCAATCGTTGTTGGCCCAGGAGGAGGGCACATTCAAACTTAACGAAACAAACTCCAGTACACAGGTGCAACTTGATGGACGCAGGATTGGTAAACTATTTGTATCTAATAAAGAAATTGCCAAGGGAAGCAATGGTACTGTTGTCCTTGAGGGGACATACGAAGGTCGGACAGTTGCTGTCAAACGTCTTGTTCAAAGTCATCATGATGTGGCCCATAAAGAAATCCAAAATCTCATTGCATCTGACAGGCATCCAAACATTGTCCGATGGTATGGGGTGGAATGCGATCATGATTTTGTTTACCTTGCTCTGGAACGCTGTACTTGCAACTTGGACGATTTGATTCATTCGCACTCTGATATATCAGAAAATCCAGCAGTTAGAACTTCTCAAATGAAGACAAAGGAGAATGATATGCACTATCTTTGGAAAACAAACGGTTTTCCATCACCTCTGTTACTGAAACTGATGAGGGATATAGTTTCTGGGCTTGTTCATTTGCATGAACTAGGGATAATCCATCGGGATTTGAAACCTCAAAATGTTTTGATATTAAAAGAAAGATTATTGGTTGCAAAGCTTTCTGACATGGGAATTAGCAAACGTCTTCTCGCAGATATGTCTTCTCTAGGTGAAAGTGTTACAGGCTGTGGCAGTTCAGGCTGGCAAGCACCAGAGCAACTTGTTCAAGGGCGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTTCTCTTTTTCTGCATGACTGCAGGAAGGCATCCGTTTGGAGAGCGGCTTGAGCGTGATGTCAATATTGTTAAAAGTCAAAAAGATCTTTTCTTAGTGGAGTTTATTCCTGAAGCTGAGGATCTTATTTCTTGTTTGTTAAACCCTAATCCTGATCTTAGGCCAATGGCGATTGAAGTATTGCAACATCCTCTCTTTTGGAGCTCTGAGATGAGACTTTCATTTTTGCGTGATGTAAGTGATAGGGTGGAACTTGAAGATAGAGAATCCGCATCTGATCTTTTGAAGTCATTAGAAAGCATTGCTTCACTGGCTTTAGGTGCAAAATGGGATGAGAAGTTAGATCCTGATTTCATCACTAACATTGGTCGATACCGGAGATATAAATTTGACAGCGTGCGGGACTTGTTGAGGGTCATGAGAAATAAGCTAAATCATTACAGGGAACTGCCTCAAGAAATCCAGGAACTGATAGGACCTGTTCCGGAAGGATTCAATGACTACTTTTCAAGTCGATTCCCAAGGCTCTTGATTGAAGTGTACAAAGTTATATACAGAAATTGCAAGAACGACGAATGCTTTCAAAGATATTTTAGATACATTAACTAG 2631 0.4135 MIASVLSSPFSLFLLIFLFFSLSTSQSQLLLPSSPPSVKPATALVAALDGTVYLLDSDSGRVFWSFSTGSPIYYSYHAPINNPNHNFTAFVECGDDWELIVHDAHLGKKRLSKSIEEYVASTPIKTKDGASVFGHKRTTMYVVNAKTGGLYRTYSEHDHASNAVSSYDDRLHVASTKDNVLVDPVQLNPPEYLLEITRTDYTLQSVVPGSGIVLWTMKVAEFKAALVCSHTENPSGRISLDAEDGYVLDGGLDFAMPYACWDMKLNEVYRQRKKFLIEPADPERLSEVYEEVDMLPFHSSELMLPSQPATDKFVLGREGMPMLSLPMPNPLSSLQHKIGFYEGNDNVPMLPRSLMETTTEEVDPGRVIKWSKTIPLVLFTIFLGSFIIYHSLVFTNKDQNRETNSKSPPPKKKKARKSIKNNIISVTQNKQSLLAQEEGTFKLNETNSSTQVQLDGRRIGKLFVSNKEIAKGSNGTVVLEGTYEGRTVAVKRLVQSHHDVAHKEIQNLIASDRHPNIVRWYGVECDHDFVYLALERCTCNLDDLIHSHSDISENPAVRTSQMKTKENDMHYLWKTNGFPSPLLLKLMRDIVSGLVHLHELGIIHRDLKPQNVLILKERLLVAKLSDMGISKRLLADMSSLGESVTGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKSQKDLFLVEFIPEAEDLISCLLNPNPDLRPMAIEVLQHPLFWSSEMRLSFLRDVSDRVELEDRESASDLLKSLESIASLALGAKWDEKLDPDFITNIGRYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQELIGPVPEGFNDYFSSRFPRLLIEVYKVIYRNCKNDECFQRYFRYIN 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2068g00023 876 SUPERFAMILY Protein kinase-like (PK-like) 456 757 IPR011009 -
Vium2068g00023 876 FunFam Inositol requiring 1-1 24 235 - -
Vium2068g00023 876 Gene3D Transferase(Phosphotransferase) domain 1 560 742 - -
Vium2068g00023 876 SMART ire1_9 123 155 IPR018391 -
Vium2068g00023 876 SMART ire1_9 36 67 IPR018391 -
Vium2068g00023 876 ProSiteProfiles Protein kinase domain profile. 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2068g00023 876 Pfam Ribonuclease 2-5A 746 872 IPR010513 GO:0004540|GO:0006397
Vium2068g00023 876 SMART serkin_6 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2068g00023 876 SMART PGNneu 805 859 - -
Vium2068g00023 876 ProSiteProfiles KEN domain profile. 743 874 IPR010513 GO:0004540|GO:0006397
Vium2068g00023 876 PANTHER IRE1-RELATED 110 873 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vium2068g00023 876 MobiDBLite consensus disorder prediction 399 418 - -
Vium2068g00023 876 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 455 535 - -
Vium2068g00023 876 Pfam Protein kinase domain 465 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2068g00023 876 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 744 876 - -
Vium2068g00023 876 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 564 742 - -
Vium2068g00023 876 Gene3D Phosphorylase Kinase; domain 1 448 535 - -
Vium2068g00023 876 CDD RNase_Ire1 744 872 - -
Vium2068g00023 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Vium2068g00023 876 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 41 220 IPR011047 -
Vium2068g00023 876 Gene3D - 20 275 IPR015943 GO:0005515
Vium2068g00023 876 Gene3D KEN domain 743 875 IPR038357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2068g00023 Vium-Chr2068 95519 102673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2068g00023 489 739 MAP Kinase Kinase Kinase AT3G06030 27.451 2.34e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Vium2068g00023 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2068g00023 K08852 - gmx:100785363 1288.48