Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2068g00022 | ATGAGTAAAGTTTGGCCCTTGGTTTTCATGGTTCTGTCCATTGGATGCTTTTCAAATGGGAGTGGCAGGCAAAATTTTACAGTACCAGAAGTTGTAAATATTGGGGCTCTCTTCTCTTACAATACCAGTGTTGGTAGAACTATAAAAGTTGCATTAGAAGCTGCGTTTGAAGATATAAATTCCGATCCAAATATTCTTGGTAGAACCAAGCTAAACCTCTCACTGCAAGAAGATTCTAAGTACAGAGGTTTCCTGAGCATTGCCGAGGTTTTGCAGGTCATGGCAAGACAGACAGTGGCGATAATAGGCCCCCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTTCTGTCATTTTCAGCTCTTGACCCTACTCTTTCTTCGCTTCAATTCCCATTCTTCATTAGAACTTGCCATAGTGATCTTTATCAAATGACTGCAATAGCAGACCTTGTTGACTACCATGGCTGGAAAGATGTTATCGCTGTCTTTCCTGATGATGATAATGGGAGAAATGGAATTAGCACATTAGGAGATAAGCTTGCGGAGAGGCGTTGCAAGATATCATATAAAGCAGCTTTGAGGCCCCAAGCATCTATGGAAGAGATTAGTAATGTGCTTGTTCAGGTGGCTCTGGCAGAATCACGGATAATAGTTGTTCATGGCAATACTCAACTTGGCCCCCAGGTGTTCACAGTTGCAAAGAATCTTGGGATGATGGGAACTGGTTATGTCTGGATAGCCACTTCTTTCCTCTCTGCTCTGCTTGATATTAACTATCCTCTCTCTCCTGATTCAATGGATGAAATTCAAGGAGTTCTTACACCACGTATCTACACGCTAAATTCACAGCGCAGAAGAAGTTTTGTTTCTAGGTGGAAAAACTTGACCAGGGCAAATACTGCCAATGTCAAGCTTGGATTGAGTTTTTTACCTATCTATGCATATGACACTGTTTATGCACTTGCTCATGCTCTTGATGCATTTTTCAAAGAAGGTAACCAAATTACATTCTCAACGGATTCAAAGCTGTCTAACATACATGGAAACAACTTGAATCTTGAGGCCTTGAAAATCTTTAATGAAGGAAATCTGTTACGTAGAAAGATCTATGAGGTAAACATGACTGGTGTATCAGGTCCATTCAAGTATACATCCGATAGAAACCTTGCTAATCCTGCATATGAAATCATTAATGTGATTGGAACAGGAACTCGACGGATCGGTTATTGGTCTAATCACTCTGGTTTATCAGTTGTTCCTCCAGAAACTCTTTATTCCAAACCAGTCAATCTGCCCAGGAAAAATCAAAAGCTGTTTCCTGTGATTTGGCCTGGAAATTCAGATGAGAAACCTCGTGGTTGGGTTTTCCCAAACAATGGAAGGCTCTTAAAGATTGGAGTACCAAGAGGTGTTAGTTACCACGAGTTTGTCTCACAGATAAAAGGCTCTGACATGTTTGAGGGATTCTGCATTGATGTATTTCTTGCTGCAGTGAATCTCTTGCCTTATGCTGTCCCCTACAGGTTCATCTCATACGGGGATGGTAAGAACAATCCTAGTATGACTGAGCTTGTCCGTCTGATCACAACGGGTGAATTTGATGGTGCAGTAGGAGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCCATTGGGAAGGCAGAATCCAATGCTTTGGCCTTTTTGGCCCCTTTTACACCAAAGATGTGGTTTGTGACAGCTTCCTTTTTCATACTAGTAGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCCAAAAAACAAGTAATTACCGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGTACACTTGGTCGTGTTGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTATACGGCAAGTCTGACCTCAATCCTCACAGTGCAACAACTTTATTCTCCCATTAAAGGCATTGAAAGTCTAGTAAACAGCAAAGTGCCTATAGGCTACACGCAGGGTTCTTTTGCAAAAAACTACTTAGTTCAGGAAATTCATATTGAGGAGTCCAGGCTAGTTCCTCTGACAACACCAGAAGAAATTGCTAAAGCACTGAAAAATGGTCCCCAAAATGGCGGTGTTGCTGCTTACATTGATGAGCGTGCCTACACTGACATCTTCCTCTCCAGCCGTTGTGATTTAAGTGTCGTAGGTCAGGAGTTCACGAGAAATGGTTGGGGATTTGCCTTCCCACGGGACTCGCCATTAGCAGTTGACCTGTCAACTGCCATATTGCAAATGATAGATAATGGAGATTTGCAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCTTGCTTATCACAAGGGGCAAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGGCTCTATGCGATCTGTGGAGTTGCGTGCTTGCTTGCACTCTTCATGTATCTTATACAGATTTTGAGGCAATACCAGAAGCACTACTTAGAGGAACCTGAGTCCATTGGTGGCCAAAGCATAGGATCATCATCAAGATCTTCACGTCTCAAGACTTTCCTTTCATTTGCAGATGAGAAAGAAGAGACTGTGAAGAGCCGGTCCAAGAGAAGGAAAATGGAGAGGATCTCATACCGAAGCTCTACAGGAAGCTCATCCATCAACTCGAATAAGGAAAATGCTTCACGCAGAAGTGAATATGCTAGTGAACTATTATGA | 2823 | 0.4159 | MSKVWPLVFMVLSIGCFSNGSGRQNFTVPEVVNIGALFSYNTSVGRTIKVALEAAFEDINSDPNILGRTKLNLSLQEDSKYRGFLSIAEVLQVMARQTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMTAIADLVDYHGWKDVIAVFPDDDNGRNGISTLGDKLAERRCKISYKAALRPQASMEEISNVLVQVALAESRIIVVHGNTQLGPQVFTVAKNLGMMGTGYVWIATSFLSALLDINYPLSPDSMDEIQGVLTPRIYTLNSQRRRSFVSRWKNLTRANTANVKLGLSFLPIYAYDTVYALAHALDAFFKEGNQITFSTDSKLSNIHGNNLNLEALKIFNEGNLLRRKIYEVNMTGVSGPFKYTSDRNLANPAYEIINVIGTGTRRIGYWSNHSGLSVVPPETLYSKPVNLPRKNQKLFPVIWPGNSDEKPRGWVFPNNGRLLKIGVPRGVSYHEFVSQIKGSDMFEGFCIDVFLAAVNLLPYAVPYRFISYGDGKNNPSMTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPIGKAESNALAFLAPFTPKMWFVTASFFILVGAVVWILEHRVNDEFRGPPKKQVITVLWFSFSTMFFSHRENTVSTLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVNSKVPIGYTQGSFAKNYLVQEIHIEESRLVPLTTPEEIAKALKNGPQNGGVAAYIDERAYTDIFLSSRCDLSVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDNGDLQRIHDKWLLSSACLSQGAKLEVERLQLKSFWGLYAICGVACLLALFMYLIQILRQYQKHYLEEPESIGGQSIGSSSRSSRLKTFLSFADEKEETVKSRSKRRKMERISYRSSTGSSSINSNKENASRRSEYASELL | 940 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2068g00022 | 940 | Gene3D | - | 50 | 400 | - | - | |
Vium2068g00022 | 940 | MobiDBLite | consensus disorder prediction | 894 | 940 | - | - | |
Vium2068g00022 | 940 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 16 | - | - | |
Vium2068g00022 | 940 | FunFam | Glutamate receptor | 709 | 816 | - | - | |
Vium2068g00022 | 940 | Gene3D | - | 759 | 819 | - | - | |
Vium2068g00022 | 940 | CDD | PBP1_GABAb_receptor_plant | 33 | 429 | IPR044440 | - | |
Vium2068g00022 | 940 | SMART | GluR_14 | 473 | 814 | IPR001320 | GO:0015276|GO:0016020 | |
Vium2068g00022 | 940 | Gene3D | - | 148 | 425 | - | - | |
Vium2068g00022 | 940 | Gene3D | - | 583 | 717 | - | - | |
Vium2068g00022 | 940 | CDD | GluR_Plant | 472 | 812 | - | - | |
Vium2068g00022 | 940 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 527 | 812 | IPR001638 | - | |
Vium2068g00022 | 940 | Gene3D | - | 479 | 582 | - | - | |
Vium2068g00022 | 940 | MobiDBLite | consensus disorder prediction | 913 | 930 | - | - | |
Vium2068g00022 | 940 | Pfam | Ligand-gated ion channel | 813 | 845 | IPR001320 | GO:0015276|GO:0016020 | |
Vium2068g00022 | 940 | FunFam | Glutamate receptor | 467 | 583 | - | - | |
Vium2068g00022 | 940 | FunFam | Glutamate receptor | 583 | 713 | - | - | |
Vium2068g00022 | 940 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 32 | 899 | IPR015683 | - | |
Vium2068g00022 | 940 | SUPERFAMILY | Periplasmic binding protein-like I | 27 | 464 | IPR028082 | - | |
Vium2068g00022 | 940 | PIRSF | IGluLR_plant | 1 | 938 | IPR017103 | - | |
Vium2068g00022 | 940 | FunFam | Glutamate receptor | 148 | 306 | - | - | |
Vium2068g00022 | 940 | Pfam | Receptor family ligand binding region | 50 | 410 | IPR001828 | - | |
Vium2068g00022 | 940 | SUPERFAMILY | Periplasmic binding protein-like II | 448 | 814 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2068g00022 | Vium-Chr2068 | 90262 | 94932 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2068g00022 | 29 | 923 | Ion Channels | AT3G51480 | 58.259 | 0.0 | 1098 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2068g00022 | K05387 | - | gmx:100793320 | 1585.08 |