Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2068g00020 ATGAGTGGTGTTGGTGGTGGATGCCCCTGCCCCAGGGGTATTAGTGATGGTGCCATGGAGGATCTGAATGGGGATACGGTGGGGAATTTGAATCAGAATGCAGCGAAGCCTCCGAGAGACCATTCTGTTATGCGACATTTCAGCAGCTCTTCTTGGTCTGCAGAGCCGGAATCAAATATTAATATTATTGGACTTAAATCAAGCACAGAAAAAAAATCAGACTTTCCACTTGAAATTCGATCTGGAAGCTATTCCGATAAAGGACCAAAGCAGTACATGGAGGATGAATTCATATGCATTGATACTCTTAGTGAATGTGACGGTCTAGGAGCAAACCTTCCTTCTCCTGCAGCATTTTATGGGGTATTTGATGGACATGGTGGCGTTGATGCAGCAGCATTCACGAGAAAGAACATCCTCAAGTTTATAGTTGAAGATGCTCATTTCCCATCTAGCATTAAGAAAGCAATTAAGAGTGCATTTGTGAAGGCTGATCTTGCTTTTAGAGATGCCAGTTCTCTTGATAGCTCTTCAGGCACCACCGCTCTGATAGCCCTTATGTTGGGAAGTTCCATGCTGATTGCCAATGCAGGAGATTCTCGTGCTGTGTTGGGCAAACGGGGCAGAGCAGTTGAACTTTCCAAAGACCATAAACCAAATTGCACTTCTGAAAGATTAAGAATTGAAAAACTTGGTGGAGTGATCTACGATGGATACCTCAACGGCCAACTATCAGTGGCTCGGGCTCTTGGAGATTGGCACATAAAAGGAAGCAAAGGTTCTAAGAGTCCTCTAAGCTCGGAGCCGGAGCTGGAGGAGATCGTGCTGACCGAAGAAGATGAGTTTTTGATAATGGGCTGTGATGGATTGTGGGATGTGATGAGCAGCCAGTGCGCTGTGACAATGGTGAGGAGGGAGATGATGCAGCATAATGATCCCAACAAATGTGCAAAAGTACTTGTTACTGAGGCCCTCCAACGCAACACTTGTGACAACCTCACAGTTGTGATTGTGAGTTTCTCCAAAGATCCACCTCCTAAAATTGAAATTCCTAGATCATGTAGGAGGAGGAGTATTTCTGCTGAGGGCCTTGATCTTCTCAAGGGTGTTTTGAATGGTAGATGA 1125 0.4516 MSGVGGGCPCPRGISDGAMEDLNGDTVGNLNQNAAKPPRDHSVMRHFSSSSWSAEPESNINIIGLKSSTEKKSDFPLEIRSGSYSDKGPKQYMEDEFICIDTLSECDGLGANLPSPAAFYGVFDGHGGVDAAAFTRKNILKFIVEDAHFPSSIKKAIKSAFVKADLAFRDASSLDSSSGTTALIALMLGSSMLIANAGDSRAVLGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPELEEIVLTEEDEFLIMGCDGLWDVMSSQCAVTMVRREMMQHNDPNKCAKVLVTEALQRNTCDNLTVVIVSFSKDPPPKIEIPRSCRRRSISAEGLDLLKGVLNGR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2068g00020 374 MobiDBLite consensus disorder prediction 19 44 - -
Vium2068g00020 374 SMART PP2C_4 70 338 IPR001932 -
Vium2068g00020 374 Gene3D - 64 344 IPR036457 -
Vium2068g00020 374 ProSiteProfiles PPM-type phosphatase domain profile. 80 340 IPR001932 -
Vium2068g00020 374 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169
Vium2068g00020 374 PANTHER PROTEIN PHOSPHATASE 2C 67 339 IPR015655 GO:0004722|GO:0006470
Vium2068g00020 374 SUPERFAMILY PP2C-like 75 341 IPR036457 -
Vium2068g00020 374 CDD PP2Cc 79 340 IPR001932 -
Vium2068g00020 374 FunFam Probable protein phosphatase 2C 22 65 343 - -
Vium2068g00020 374 SMART PP2C_SIG_2 95 340 IPR001932 -
Vium2068g00020 374 Pfam Protein phosphatase 2C 87 332 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2068g00020 Vium-Chr2068 84296 87139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2068g00020 63 372 PP2C-type Phosphatase Gene Family AT3G51470 77.097 4.26e-175 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2068g00020 K14803 - gmx:100786416 643.269