Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2068g00019 ATGAGTGGTGTTGGTGGTGGATGCCCCTGCCCCAGGGGTATTAGTGATGGTGCCATGGAGGATCTGAATGGGGATACGGTGGGGAATTTGAATCAGAATGCAGCGAAGCCTCCGAGAGACCATTCTGTTATGCGACATTTCAGCAGCTCTTCTTGGTCTGCAGAGCCGGTATTTGATGGACATGGTGGCGTTGATGCAGCAGCATTCACGAGAAAGAACATCCTCAAGTTTATAGTTGAAGATGCTCATTTCCCATCTAGCATTAAGAAAGCAATTAAGAGTGCATTTGTGAAGGCTGATCTTGCTTTTAGAGATGCCAGTTCTCTTGATAGCTCTTCAGGCACCACCGCTCTGATAGCCCTTATGTTGGGAAGTTCCATGCTGATTGCCAATGCAGGAGATTCTCGTGCTGTGTTGGGCAAACGGGGCAGAGCAGTTGAACTTTCCAAAGACCATAAACCAAATTGCACTTCTGAAAGATTAAGAATTGAAAAACTTGGTGGAGTGATCTACGATGGATACCTCAACGGCCAACTATCAGTGGCTCGGGCTCTTGGAGATTGGCACATAAAAGGAAGCAAAGGTTCTAAGAGTCCTCTAAGCTCGGAGCCGGAGCTGGAGGAGATCGTGCTGACCGAAGAAGATGAGTTTTTGATAATGGGCTGTGATGGATTGTGGGATGTGATGAGCAGCCAGTGCGCTGTGACAATGGTGAGGAGGGAGATGATGCAGCATAATGATCCCAACAAATGTGCAAAAGTACTTGTTACTGAGGCCCTCCAACGCAACACTTGTGACAACCTCACAGTTGTGATTGTGAGTTTCTCCAAAGATCCACCTCCTAAAATTGAAATTCCTAGATCATGTAGGAGGAGGAGTATTTCTGCTGAGGGCCTTGATCTTCTCAAGGGTGTTTTGAATGGTAGATGA 930 0.4688 MSGVGGGCPCPRGISDGAMEDLNGDTVGNLNQNAAKPPRDHSVMRHFSSSSWSAEPVFDGHGGVDAAAFTRKNILKFIVEDAHFPSSIKKAIKSAFVKADLAFRDASSLDSSSGTTALIALMLGSSMLIANAGDSRAVLGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPELEEIVLTEEDEFLIMGCDGLWDVMSSQCAVTMVRREMMQHNDPNKCAKVLVTEALQRNTCDNLTVVIVSFSKDPPPKIEIPRSCRRRSISAEGLDLLKGVLNGR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2068g00019 309 MobiDBLite consensus disorder prediction 19 44 - -
Vium2068g00019 309 SMART PP2C_4 30 273 IPR001932 -
Vium2068g00019 309 ProSiteProfiles PPM-type phosphatase domain profile. 43 275 IPR001932 -
Vium2068g00019 309 SMART PP2C_SIG_2 39 275 IPR001932 -
Vium2068g00019 309 Gene3D - 32 279 IPR036457 -
Vium2068g00019 309 SUPERFAMILY PP2C-like 49 276 IPR036457 -
Vium2068g00019 309 CDD PP2Cc 57 275 IPR001932 -
Vium2068g00019 309 PANTHER PROTEIN PHOSPHATASE 2C 47 274 IPR015655 GO:0004722|GO:0006470
Vium2068g00019 309 FunFam Probable protein phosphatase 2C 22 18 278 - -
Vium2068g00019 309 Pfam Protein phosphatase 2C 48 267 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2068g00019 Vium-Chr2068 84296 87141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2068g00019 43 307 PP2C-type Phosphatase Gene Family AT3G51470 78.868 6.92e-156 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2068g00019 K14803 - gmx:100786416 442.965