Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2068g00016 ATGTCGTGTTCGTCGTCGTCGGGGTCGGAGGAAGACGATGAGGGATTCGACTCTTACCGGAAAGGAGGGTACCACGCCGTCAGAGTCGGCGATCAGTTCGGCGGCGGCAGGTACATAGCGCAGAGGAAACTGGGTTGGGGTCAGTTCTCCACCGTCTGGCTTGCTTACGATACCAAAACTTCTTCATTTGTTGCTCTCAAGATCCAGAAAAGTGCCGCCGAGTTTGTTCAGGCTGCCCTTCATGAGATTGATATTCTTTCATCCATTGCTGACCATGACCCATCAAATTCAAAATTTGTGATTCAATTGATTGACAACTTTAAACACACTGGTCCAAATGGGCAGCATCTTTGCATGGTCCTGGAGTTTCTTGGCGATAGTTTGCTTCGCTTGATCAAATATAACCGTTACAAAGGCCTTCCATTGAATAAAGTTAGAGAGATTTGCAAATGCGTTTTAATTGGTTTGGACTACTTGCATACTGATCTTGGTATAATCCACTCTGACCTAAAACCTGAAAACATTCTTCTATGTTCAACCATTGATCCTGCCAAAGACCCTTTAAGATCTGGACTCTCTCCAATTCTAGAGCGACCTGAGGGAAACACAAATGGTGGAGTATCAAGTCTTATTGAGAAAAGGTTGAAAAGGAGAGCAAGGTCGGCAGTTGCTAAGATATCCGGAAGGAGAGGGTCAATGGGAGGAACAGAAGATGTTGCAAAGACCGATAGAAACATTAATGGGATTGATGTGCGATGCAAGATAGTAGATTTTGGAAATGCTTGTTGGGCTGAGAAGCAGTTTGCAGAAGAAATACAGACAAGACAGTACAGAGCACCTGAAGTTGTACTGATATCTGGCTATTCTTTCCCTGTTGACATGTGGTCTTTTGCTTGCATAGCTTTTGAACTAGCCACTGGAGATATGTTGTTTACACCAAAGGGTGGACAAGGTTTTAGTGAGGATGAGGATCACCTCGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTATTGGTGGAGCTCAGTCCAAGGATTACTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTCTGTCCACTAGACAAATTGCTGACTGATAAATATAAATTTTCAGTTAATGATGCTCGAGAGTTTTCAGAATTTCTTCTACCACTCTTTGATTTTGCCCCTGAGAAGCGACCAACTGCGAGACAGTGCCTGGAACATCCATGGCTGAAGTGCATGGAGTCCCCTCCAAATCAAACTGCTGAGGAAAAAGTGCATGTTGGAATTAGCAACCTTAAAATCTCACAGTCCAAGGCATAG 1329 0.4432 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFGGGRYIAQRKLGWGQFSTVWLAYDTKTSSFVALKIQKSAAEFVQAALHEIDILSSIADHDPSNSKFVIQLIDNFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPLNKVREICKCVLIGLDYLHTDLGIIHSDLKPENILLCSTIDPAKDPLRSGLSPILERPEGNTNGGVSSLIEKRLKRRARSAVAKISGRRGSMGGTEDVAKTDRNINGIDVRCKIVDFGNACWAEKQFAEEIQTRQYRAPEVVLISGYSFPVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLTDKYKFSVNDAREFSEFLLPLFDFAPEKRPTARQCLEHPWLKCMESPPNQTAEEKVHVGISNLKISQSKA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2068g00016 442 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Vium2068g00016 442 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2068g00016 442 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 204 - -
Vium2068g00016 442 CDD STKc_SRPK 27 413 - -
Vium2068g00016 442 SUPERFAMILY Protein kinase-like (PK-like) 34 421 IPR011009 -
Vium2068g00016 442 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Vium2068g00016 442 FunFam Protein kinase superfamily protein 24 123 - -
Vium2068g00016 442 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2068g00016 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vium2068g00016 442 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2068g00016 442 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2068g00016 442 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Vium2068g00016 442 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2068g00016 Vium-Chr2068 65041 69262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2068g00016 4 413 EF-hand Containing Proteins AT5G22840 51.717 6.12e-167 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vium2068g00016 Pkinase 6.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2068g00016 K08832 - gmx:100784192 793.497