Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2068g00001 ATGGGAGGCTTATTACACTTCTTTGAATTCAATCAGGGGAGGATGGCCAAGAAAGTCCTTGCTCGGAAGAGACATCATGGTGGCCTGGAAGCTCCTCGAAATAGTCTAGATCTGCAAGTACAAACCCCTCAGAACTACTGCCCACAAGGAGAATTATCATGCAGTTATCAAGTGGAAGAAGAGGGCAGGTCTGAGAATAATCGTTATTCAAACGTGGGTTCAATGAAAAAACTGATCAATGAGGAGCTATCCAAACAATCAAGCACCAGGCAAAATGCGCCAAGCCTTGTGGCAAGGTTGATGGGGATAGATACGATGCCATTAGACACTAAATATGTTGTCCCATCAGATAAGAGAATGAGTGAAAACGTGGGGAAGAAGTCTTCAGAGAAAGGATTGAGTCGAAGGGGTTCAGTTAGTTGGGGTTCTTCTAACTTTAATTCTTCGAGCCAGATGGATTTTGAGTCATTATACGAAGACATGGATGTTGATGACAACGATGATGGGTGGAACAAGAGTTTTGGAGAACCAAGGCAGCGGGATCATCCTCAGGAAGAGGAACTACAGAAATTCAAGAAAGAGTTTGAAGCATATCAAGCAGCAAGGTTTCAAGAGTGTTCGAAGGTTGCTGAAATTGGTAGTGTTCCTAAACGGTTGCTAGTTCAAGAAAACTCGAACAAGGAAAAGGTGATTCATAGTGATTTAGTTTTACAAAGAGCAGCAGCAGGGAAACCTGCAGATCTTGATAACCATTCATTCAAAACACCACCACCTGAAAGTTATGGTTCAGAATATCATGGTGACATGATGGAGTTAGTCTCAGCTACTCAAAGGAAAACCTTTCCTCCTAGGAGCAGAACATTAAGTAGAGACTTTGAGGAGTCCTTAATGATGAAATCCTGCAACAGATTAGACACGTCTGCTTCTCCCACCAGGATAGTTATCTTGAAGCCTGGTCCTGAGAGCATTAGCAACCATGAAGAGAATTGGACCATTTCAACCGGAACTATACAAGGGAGAAATAGTATAGAAGATTTTCTTGAAGAGGTGAAAGAGCGTTTAAAATGTGAACTGCAAGGGAAAATTGTCAAAAAGATTTCTGTGGTTCGAGGGAGTGGAATTGAAACACCTTACAATGAAAAACCATCTGATCCTAAACTAATAGCTCGACATATAGTAAAGCAAGTCAGAGAAAGTGCGACCAGAGATGCTGACACAAATTTACTCCATTCTGAATCAACAGGGTCGTTCAAGAGTGAAATGCAATTCAATGGAGCAACTTCCCCTGAAGTTATCAGCAGAGATACCCGGAAGTTCTTGTCAGATAGGCTAAGAAATGTTGTGAGAAGTGAAGCACGTGCTGGTTTTCCCGAGAGAAAATCAAGGTCACTTGCATTAGATAGTCATAAAGATGGACTAAAGCAAGGGGGGGATATTATGAAGTACGCAAGTAACTGGGAAATTTCCAAAGAGGACGCAGAAATACAAACAGGTTCTTTCAGACATGAACTGGATGAAAATATATTTCTGCACAGGGAGTTGTCTCCAAGGAATCTTGTAAGATCCTTGTCTGCTCCTGTATCACGATCAGGAACATCATTTGGGAAGCTTCTTCTGGAGGACCGCCACCTTTTAACTGGTGCTCAGATTCGGAGGAAGCTTGAAGCTGTTGAAACTATGTCCGTTGATGTCAAGAAACGGAAAAAGGATAGATTTAATATTAAGGAACGAGTCTCCAATTTTAGATATAATCTTGCTTTAAGAGGGAGGCTTTTTGGCAGAAGGGTTCAATCAACGGTGGAATCACGTGCCAATGAGTATGGTCCCATGGTGAGAGATGTCACAAGTGGACCAACAGTTCTCATGAACTGCGGTGAGCGCCATGAGAACTCCACTGAGGTACCTCCGAGTCCTGCATCTGTATGCAGCAGCATTCATGAAGACTTTTGGAGGCGGACTGAATATTTAAGTCCAATATCAACTCCTGATGTGTCTTCAAGAGATGATACAGCTGTGCCACAGGTTTTCAGGGATATCAGCTCTGGTTTGAATGAACTAAGGAGGCAACTCAATCAACTTGAATCAGATGGTCCTGAGGACTTCACTATGAAACATGAGGCCTCTGAGTCTGACTTGGACCAACTAGAGGATCCAGCGGAATCATACATAAGAGACCTACTTGTTGCTTCTGGACTATACTTTGGTTCATGGGATAAGTCTTTATTAAGAGGGGACACATTTGCAAAGCCTATTGGCAACTCGGTTTATGAAGAAGTGGAAGAATCTCGCAGGAAATGGGTCAAGGAAGATGATGACAGCTGCATCAAGGATCACGATAAGAATAAACCAGGCCACAAAGTGTTGCTTGATCTGTTAAATGAGGCACTTTCAGTTGTTCTCGGACCTCCATTGACATTGTCCAGATTCAGAAAAAAACTAAGTAACTCTTCCATGTTGCTACCTTCTGGAAAGGAACTATTGAACTTAGTGTGGGACATTATCCGTGTTTCTATATATCCTCCATCTGACATATCTACTTATTCACTTGATGATTTGGTGGCTCAACACCTAGGATCCATCCCCTGGTCTGAATTAATAAACGATGAGATCAATATTTTGGAAAGAGATATAGAATGTCTAATAACTGATGACCTGGTTGAAGAACTCACAAAGGATATATGTTCTAAAATGAAGTGA 2697 0.4194 MGGLLHFFEFNQGRMAKKVLARKRHHGGLEAPRNSLDLQVQTPQNYCPQGELSCSYQVEEEGRSENNRYSNVGSMKKLINEELSKQSSTRQNAPSLVARLMGIDTMPLDTKYVVPSDKRMSENVGKKSSEKGLSRRGSVSWGSSNFNSSSQMDFESLYEDMDVDDNDDGWNKSFGEPRQRDHPQEEELQKFKKEFEAYQAARFQECSKVAEIGSVPKRLLVQENSNKEKVIHSDLVLQRAAAGKPADLDNHSFKTPPPESYGSEYHGDMMELVSATQRKTFPPRSRTLSRDFEESLMMKSCNRLDTSASPTRIVILKPGPESISNHEENWTISTGTIQGRNSIEDFLEEVKERLKCELQGKIVKKISVVRGSGIETPYNEKPSDPKLIARHIVKQVRESATRDADTNLLHSESTGSFKSEMQFNGATSPEVISRDTRKFLSDRLRNVVRSEARAGFPERKSRSLALDSHKDGLKQGGDIMKYASNWEISKEDAEIQTGSFRHELDENIFLHRELSPRNLVRSLSAPVSRSGTSFGKLLLEDRHLLTGAQIRRKLEAVETMSVDVKKRKKDRFNIKERVSNFRYNLALRGRLFGRRVQSTVESRANEYGPMVRDVTSGPTVLMNCGERHENSTEVPPSPASVCSSIHEDFWRRTEYLSPISTPDVSSRDDTAVPQVFRDISSGLNELRRQLNQLESDGPEDFTMKHEASESDLDQLEDPAESYIRDLLVASGLYFGSWDKSLLRGDTFAKPIGNSVYEEVEESRRKWVKEDDDSCIKDHDKNKPGHKVLLDLLNEALSVVLGPPLTLSRFRKKLSNSSMLLPSGKELLNLVWDIIRVSIYPPSDISTYSLDDLVAQHLGSIPWSELINDEINILERDIECLITDDLVEELTKDICSKMK 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2068g00001 898 Coils Coil 676 696 - -
Vium2068g00001 898 Pfam Domain of unknown function (DUF4378) 721 888 IPR025486 -
Vium2068g00001 898 MobiDBLite consensus disorder prediction 114 145 - -
Vium2068g00001 898 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 894 - -
Vium2068g00001 898 Pfam DUF761-associated sequence motif 89 107 IPR032795 -
Vium2068g00001 898 MobiDBLite consensus disorder prediction 167 185 - -
Vium2068g00001 898 MobiDBLite consensus disorder prediction 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2068g00001 Vium-Chr2068 8533 14365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2068g00001 75 893 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 39.766 1.30e-151 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2068g00001 - - gmx:100789616 1498.41