Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2065g00016 ATGGCGAAGGAAGGAGAGAAATGTAGTGAAGAGTTGTATGAGGTTCTGGGCATAGAAAAGGAGTGTAGCCCATCTGAACTCAAGAAAGCCTATAAGAAACTTGCACTGAGATGGCACCCAGATCGTTGTTCAGGGAGCCGCGAGGAAAAAGGGAAGGAGAAGTTCCAGGCAATCCAGCACGCCTATTCTGTCTTATCTGATGCCAACACAAGGTTACTGTACGAAGTAGGTGTCTATGACAGCGATGACGACCAAACCGGCATGGGTGATTTCTTGAATGAAATGGCCACAATGATGACTCAATCAAAACCCAGTGAGAATGGGGAGGAGAGTTTTGAGGAGTTCCAACAGCTCTTCGAAGAAATGTTTCAAGCCACTGCACCTGTTTCACCTACGTACATCATGACTAATGCTGAAGGTTCTAGATCAAATAAACGTAATTCCACTGAAATTAATTTTGGAAAGACAGACAATACATCTGAACTCAATTCGAGTGACCAGAACTTCTGTTTAGGGGGAGGTGGAGCAGCTCCAAGATATGGAGAAGGGAATTCCATGAGGAGGAGGTAG 570 0.4509 MAKEGEKCSEELYEVLGIEKECSPSELKKAYKKLALRWHPDRCSGSREEKGKEKFQAIQHAYSVLSDANTRLLYEVGVYDSDDDQTGMGDFLNEMATMMTQSKPSENGEESFEEFQQLFEEMFQATAPVSPTYIMTNAEGSRSNKRNSTEINFGKTDNTSELNSSDQNFCLGGGGAAPRYGEGNSMRRR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2065g00016 189 ProSiteProfiles dnaJ domain profile. 11 78 IPR001623 -
Vium2065g00016 189 MobiDBLite consensus disorder prediction 139 189 - -
Vium2065g00016 189 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Vium2065g00016 189 Gene3D DnaJ domain 8 131 IPR036869 -
Vium2065g00016 189 Pfam DnaJ domain 12 74 IPR001623 -
Vium2065g00016 189 SUPERFAMILY Chaperone J-domain 11 90 IPR036869 -
Vium2065g00016 189 CDD DnaJ 11 67 IPR001623 -
Vium2065g00016 189 PRINTS DnaJ domain signature 50 70 IPR001623 -
Vium2065g00016 189 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vium2065g00016 189 PRINTS DnaJ domain signature 13 31 IPR001623 -
Vium2065g00016 189 PANTHER PUTATIVE, EXPRESSED-RELATED 1 149 - -
Vium2065g00016 189 MobiDBLite consensus disorder prediction 139 170 - -
Vium2065g00016 189 SMART dnaj_3 10 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2065g00016 Vium-Chr2065 59837 62792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2065g00016 13 75 C2H2 Transcription Factor Family AT1G74250 46.970 3.56e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2065g00016 - - lja:Lj3g3v2576120.1 214.542