Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2065g00013 ATGGCTTCTCCCTATGATCTCAGAAGAAGCATTCTGGTTTTGCTGTTGGTGACAGCTTCAGCTTGGGAAGAAGAGAAGAAAACATTCATAGTGCAAGTGCAGCACGATGCGAAGCCTTCGATCTTCCCCACGCACAGGCACTGGTACGAATCATCACTGGGTGAGGCCACCTCCATAATCCACACCTACCAAACAGTCTTCCACGGATTCTCTGCAACTCTCTCCGCCGCGGAGGTGGAGAACCTGGAGTCACTCTCCCACGTCATAGCCCTCATACCCGAGCAGGTGCGCCAACTCCACACCACGCGCTCCCCTCACTTCCTCGGCCTCAACACCGCCGACAGGGCTGGCTTGCTAAAGGAAACCGATTTCGGCTCCGATCTTGTCATCGGACTCATCGACACCGGCATTTCACCCGAAAGCCAGAGCTTTAACGACCGCGACTTAGGCCTCCCTCCCCCCAACTGGAAGGGTCAATGCGTCGCCGGAAAAGGCTTCCCCCCCAACTCCTGTAACCGCAAGCTCATCGGAGCCCGCTACTTCTGCGGCGGTTACGAAGCCACCAACGGCAAAATGAACGAAACACTCGAGTACCGTTCTCCGAGAGACACTGACGGTCACGGTACCCACACCGCTTCCATCGCCGCCGGCAGGTACGTCTTTCCGGCCTCCGTCATGGGCTACGCCAAGGGAATGGCCGCCGGGATGGCTCCCAAGGCTCGCCTCGCCGTCTACAAGGTCTGCTGGAACGCTGGCTGCTACGACTCCGACATCCTGGCAGCATTCGACGCCGCCGTGGCCGACGGTGTTAACGTGGTCTCTCTGAGCGTCGGGGGCGTCGTGGTTCCCTACCACCTGGACGTGATCGCTGTGGGGGCCTTCGGAGCCTCGGAGGCTGGCGTGTTCGTGTCTGCCTCGGCGGGGAACGGCGGTCCCGGCGGGCTGACGGTGACGAATGTGGCACCGTGGATGACAACTGTGGGGGCCGGAACCATAGACAGAGATTTCCCGGCGGATGTTATTCTGGGGAACGGGAAGGTGATTGGTGGAGTGAGTGTCTACGGTGGGCCAGGGCTGAGTCCGGGTCGGCGGTACCAGCTGGTGTATGCTGGGTCTGACGGTTACTCTTCCTCTCTCTGCTTGGAAGATTCCTTGGACCCTAAATCCGTGAGTGGTAAGATTGTTGTCTGTGACAGAGGCGTCAATTCAAGGCCTGCCAAAGGCCTAGTCGTGAAGAATGCCGGTGGAGTTGCCATGATTTTGGCCAATGGTCCCTTCGATGGAGAAGGTCTGGTAGCTGACTGCCACGTCCTCCCGGCCACCTCCGTCGGTGCCGCTGGGGGCGACCAAATTCGAAGATACATCTCGTTGGCCTCACAGTTACGGTCGCCACCCACCGCAACCATTTTATTCAGGGGCACGAGGGTTGGGGTTAAGCCAGCGCCAAAGGTGGCGTCTTTCTCGGCCAGAGGGCCTAATCCGGTTTCCCCTGAGATTTTGAAGCCCGATGTGATTGCGCCTGGATTGAACATTCTTGCGGCATGGCCTTCTTCCATTCCTCCTTCTTCCCTACCTTCCGACCACCGTACCACTGACTTCAACATACTCTCCGGCACCTCTATGGCCTGCCCTCACGTCTCCGGTTTGGCTGCTCTTTTGAAAGCGGCCCACCCTGACTGGAGTCCCGCCGCCATAAGATCTGCTCTCATCACCACTGCCTACACTCTCGACAATGGAGGAGGTGGAGGGACCTTGTTGGACGAGTCCACTGGGAATGCTTCTTCGGTCTTCGATTATGGGGCTGGCCACGTTCACCCGGAGAAGGCCATCAACCCCGGTCTGGTCTATGACATTTCCACCTACGATTATGTCGATTTCCTCTGCAATTCCAACTACACTGCCCACAATATTCGGGTTATCACCAGAAAGGCCGCAGACTGCAGTGGAGCAAAGAGGGCCGGTCACGCTGCCAATCTCAATTACCCCTCTTTATCTGCTGTCTTTCAACAGTATGGCAAGGAAGGCTCACGCATGTCTACACACTTCATTAGAACTGTCACCAACGTTGGAGACCCCAACTCCCTTTACAGGGTTACTGTTGCAGCCCCTGCCGACACCGAAGTCACTGTTGAACCGGACACACTGGCTTTCAGGAGGTTGGGTCAGAAACTGAACTTCCTTGTGAGGGTGCAAACCAGGGAAGTGAAGCTTTCACCCGGGAGTTCAACTGTCAAGACTGGCTCCATAGTTTGGTCTGATGCCAAGCACACTGTCACCACTCCCTTGGTCGTCACCATGCACCAACCTCTCTGA 2313 0.5711 MASPYDLRRSILVLLLVTASAWEEEKKTFIVQVQHDAKPSIFPTHRHWYESSLGEATSIIHTYQTVFHGFSATLSAAEVENLESLSHVIALIPEQVRQLHTTRSPHFLGLNTADRAGLLKETDFGSDLVIGLIDTGISPESQSFNDRDLGLPPPNWKGQCVAGKGFPPNSCNRKLIGARYFCGGYEATNGKMNETLEYRSPRDTDGHGTHTASIAAGRYVFPASVMGYAKGMAAGMAPKARLAVYKVCWNAGCYDSDILAAFDAAVADGVNVVSLSVGGVVVPYHLDVIAVGAFGASEAGVFVSASAGNGGPGGLTVTNVAPWMTTVGAGTIDRDFPADVILGNGKVIGGVSVYGGPGLSPGRRYQLVYAGSDGYSSSLCLEDSLDPKSVSGKIVVCDRGVNSRPAKGLVVKNAGGVAMILANGPFDGEGLVADCHVLPATSVGAAGGDQIRRYISLASQLRSPPTATILFRGTRVGVKPAPKVASFSARGPNPVSPEILKPDVIAPGLNILAAWPSSIPPSSLPSDHRTTDFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALITTAYTLDNGGGGGTLLDESTGNASSVFDYGAGHVHPEKAINPGLVYDISTYDYVDFLCNSNYTAHNIRVITRKAADCSGAKRAGHAANLNYPSLSAVFQQYGKEGSRMSTHFIRTVTNVGDPNSLYRVTVAAPADTEVTVEPDTLAFRRLGQKLNFLVRVQTREVKLSPGSSTVKTGSIVWSDAKHTVTTPLVVTMHQPL 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2065g00013 770 SUPERFAMILY Protease propeptides/inhibitors 27 92 - -
Vium2065g00013 770 Pfam Subtilase family 125 587 IPR000209 GO:0006508|GO:0008236
Vium2065g00013 770 Pfam PA domain 365 451 IPR003137 -
Vium2065g00013 770 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 100 IPR037045 -
Vium2065g00013 770 Gene3D - 333 477 - -
Vium2065g00013 770 FunFam Subtilisin-like protease SBT1.5 627 767 - -
Vium2065g00013 770 FunFam subtilisin-like protease SBT1.5 333 476 - -
Vium2065g00013 770 FunFam Subtilisin-like protease SBT1.9 17 100 - -
Vium2065g00013 770 Gene3D Peptidase S8/S53 domain 127 623 IPR036852 GO:0004252|GO:0006508
Vium2065g00013 770 ProSiteProfiles Serine proteases, subtilase domain profile. 104 610 - -
Vium2065g00013 770 SUPERFAMILY PA domain 359 451 IPR046450 -
Vium2065g00013 770 ProSitePatterns Serine proteases, subtilase family, serine active site. 538 548 IPR023828 -
Vium2065g00013 770 CDD PA_subtilisin_like 339 469 - -
Vium2065g00013 770 Gene3D - 627 767 - -
Vium2065g00013 770 Pfam Fibronectin type-III domain 658 764 IPR041469 -
Vium2065g00013 770 CDD Peptidases_S8_3 98 574 IPR034197 -
Vium2065g00013 770 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 52 764 IPR045051 -
Vium2065g00013 770 PRINTS Subtilisin serine protease family (S8) signature 125 144 IPR015500 -
Vium2065g00013 770 PRINTS Subtilisin serine protease family (S8) signature 537 553 IPR015500 -
Vium2065g00013 770 PRINTS Subtilisin serine protease family (S8) signature 203 216 IPR015500 -
Vium2065g00013 770 Pfam Peptidase inhibitor I9 28 100 IPR010259 -
Vium2065g00013 770 SUPERFAMILY Subtilisin-like 99 614 IPR036852 GO:0004252|GO:0006508
Vium2065g00013 770 FunFam Subtilisin-like protease SBT1.5 127 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2065g00013 Vium-Chr2065 43461 46527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2065g00013 28 770 Subtilisin-like Serine Gene Family AT3G14240 73.838 0.0 1126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2065g00013 - - gmx:100784180 1301.96