Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2065g00012 ATGTGGTGGAGATCAGCGTCATTCATCATGGACAGGCAGCAGAACGAGGCTGCTCTCAAGGGAGACACCGTCGCTCCTACCGAATCATCGATATCAAACCCTAACCCTAATCCTAATCCCAACTCTAACCCTAAGACCTCTGCCTACTATGAGACCAGAGCAGCACATCATGGCGTTGTCACCAGCGACTGGCTGGCCCAGGCTCAGGCCGCCATTGGGCCAGACCCTGATCCTCTACCTCAACTCAGGCCCGATCCTGACAAGCCATTCAGCGTCATCAAGGAGTTTAATAACTGGCGGATACAGCCCCATTTGGCGGAGGCCGTCGCCGCCATTCGCGCCTTGGCCGCCGTCATAAGGACCAGCCGGGCTACCACCATGATGCAGCTGGAAATGGAGCTGAAGAAGGCCTCCGATACTCTGAAGTCGTGGGATGCCACCTCTATCTCTTTAACAGCGGGCTGTGATCTCTTTATGCGATATGTCACTCGGACTTCTGCTTTAGAATACGAAGACTTCAATTCCGCTAAATCTCGCTTGATTGAGCGTGCGGAGAAGTTCGGCGAAATCTCCCACAAGGCCCGCAAAGTTATCGCGATGTTGAGTCAGGATTTCATATTTGATGGTTGCACAATTTTGGTTCATGGTTTTTCCAGAGTTGTGTTGGAAGTCCTCAAACTGGCAGCACAAAACAAGAAATTATTTCGGGTCTTCTGCACAGAGGGAAGACCAGATCGAACAGGATTGCGGTTGTCCAATGAGCTGGCCAAGCTTGATGTTCCTGTGAAACTACTAATAGATTCTGCTGTGGCATATACTATGGATGAGGTGGACATGGTTTTTGTAGGTGCAGATGGAGTTGTGGAAAGTGGGGGCATAATCAACATGATGGGAACCTACCAAATTGCATTGGTTGCACACGGGATGAATAAACCAGTTTATGTCGCTGCTGAAAGCTACAAGTTTGCTCGTCTCTACCCTCTTGACCAAAAGGATTTAGCCCCTGCTTTACGCCCTATTGATTTCGGTGTACCTATTCCATCCAAGGTTGAGGTTGAAAGGTCCGCGCGGGACTACACCCCTCCTCAATACCTTACTCTGCTTTTCACAGATTTAGGTGTTCTTACCCCATCTGTTGTCAGTGATGAGCTGATCCAGCTATACTTATAG 1170 0.4957 MWWRSASFIMDRQQNEAALKGDTVAPTESSISNPNPNPNPNSNPKTSAYYETRAAHHGVVTSDWLAQAQAAIGPDPDPLPQLRPDPDKPFSVIKEFNNWRIQPHLAEAVAAIRALAAVIRTSRATTMMQLEMELKKASDTLKSWDATSISLTAGCDLFMRYVTRTSALEYEDFNSAKSRLIERAEKFGEISHKARKVIAMLSQDFIFDGCTILVHGFSRVVLEVLKLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHGMNKPVYVAAESYKFARLYPLDQKDLAPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2065g00012 389 Pfam Initiation factor 2 subunit family 102 377 IPR000649 GO:0044237
Vium2065g00012 389 Coils Coil 127 147 - -
Vium2065g00012 389 FunFam Translation initiation factor eIF-2B subunit alpha 193 389 - -
Vium2065g00012 389 Gene3D - 89 190 IPR042528 -
Vium2065g00012 389 MobiDBLite consensus disorder prediction 19 47 - -
Vium2065g00012 389 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 56 389 - -
Vium2065g00012 389 Gene3D - 193 389 IPR042529 -
Vium2065g00012 389 MobiDBLite consensus disorder prediction 25 47 - -
Vium2065g00012 389 FunFam Translation initiation factor eIF-2B subunit alpha 88 190 - -
Vium2065g00012 389 SUPERFAMILY NagB/RpiA/CoA transferase-like 101 388 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2065g00012 Vium-Chr2065 39515 42733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2065g00012 1 389 Eukaryotic Initiation Factors Gene Family AT1G53880 79.241 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2065g00012 K03239 - gmx:100799015 655.21