Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2065g00009 ATGACCAACCGAATAAAAACAGCTCTTCCCGCTATTTTGGATGCCCTCACCAAAACCAAGACCAAGACCAAACTCTTGTTGGCTCTTGCTGCCACTCTTCTTGTCGCCCTCGCCGTTGTCGCCGGAGTCAGCTCTCGCAAGAACTCCGGCGACAATGCCTCCACCTCCAGTTCGTCGCACGCCATCATCAAAAGCGCCTGCAGCAGCACCTTGTACCCGGAGTTGTGCTTCTCAAGCATAGCCTCTGAACCCGGCCTGGCCGACAAAGTTTCCAGCCACAAGAACGTGATAGAGCAGTCGCTGAACATAACCGCTGGAATCGTTGAGCGGAATTACTTTACCGTGAAGAAGCTCTTAAACGTAAAGAGCCTGACCAAGAGGCAGAAAACGGCCCTCCACGATTGCTTGGAAACCATTGACGAGACCTTGGACGAGCTCCACAAGGCCATAGATGAACTCAAAGACTACCCCTCCAAGAAGCCTCTCTCGCACCACGCCGAGGATCTCAAAACTCTCATCAGTTCGGCCATAACCAACCATGAGACTTGCCTCGACGGGTTCTCTCACGAGCAGGCCGATAAAAGACTGAGGAAGCATTTCCAGGCTGGCCAGGTGCACGCCGAGCACTTGTGCAGCAACGCATTGGCCATGACAAAAAACCTCACTGACACCGACATGGCCATGGCCATGCACAACGACGACAAAAACGAGCACAGGAAAACCATGGAGGACCCCCATGAAATCGTGTGGCCCCACTGGATTTCCGCCGCCGACCGCCGCCTTCTGCAGTCGGGTACGGTCAGTCCTAACGTGGTAGTGGCCGCGGACGGCAGCGGGAACTTCAGGACGGTGTCGGCAGCGGTGGCTGCGGCTCCTGAGAGTAGTAGCAAGAGATACGTGATCAGGATCAAAGCAGGTGTGTACAGAGAGAACGTGGATGTGCCAAAGAAGAAGACTAACATAATGTTCCTTGGGGATGGCAGGACCAACACCATCATCACAGCTAGTAGAAACGTGGTAGACGGGAGCACCACCTTCAATTCTGCCACAGTTGCCGTGGTTGGTGAAAGATTCTTGGCAAGAGACATAACCTTTCAAAACACAGCTGGTCCTTCAAAGCACCAAGCGGTTGCTCTCAGAGTTGGTGCTGACCTCTCAGCATTCTACAGGTGCGACTTTCTTGCATACCAAGACACCCTTTACGTCCACAGCAACCGCCAATTCTTTATCAGTTGCTACGTAGCAGGCACAGTCGACTTCATCTTCGGTAACTCTGCGGCTGTCATCCAGAACTCGGACATTCACGCTAGGCGTCCTAACAGTGGGCAGAAGAACATGGTCACCGCTCAGGGCCGCGTTGACCCCAACCAAAACACCGGCATTGTCATTCAGAAAAGCAGGATTGGTGCAACCAAAGACTTGGAATCTGTCAAGAGCAGCTTCCCCACGTTTCTCGGGAGGCCATGGAAGGAGTACTCTCGTACTGTCATCATGCAGTCAACCATAAGTGACGTCATTGACCCTGCTGGGTGGCACGAGTGGAATGGGAACTTTGCTTTGAACACGTTGTTCTACGGGGAGTATCAGAACACTGGGCCTGGTGCTGCAACCTCAAGGAGGGTCACTTGGAAAGGGTTTAAGGTCATCACCAGTGCTGCTGAGGCTCAGCGCTTCACTCCTGCCAATTTCATTGCAGGTTCAAGCTGGTTGCCCTCTACTGGCTTCCCATTCTCTCTTGGCCTCTAG 1746 0.5332 MTNRIKTALPAILDALTKTKTKTKLLLALAATLLVALAVVAGVSSRKNSGDNASTSSSSHAIIKSACSSTLYPELCFSSIASEPGLADKVSSHKNVIEQSLNITAGIVERNYFTVKKLLNVKSLTKRQKTALHDCLETIDETLDELHKAIDELKDYPSKKPLSHHAEDLKTLISSAITNHETCLDGFSHEQADKRLRKHFQAGQVHAEHLCSNALAMTKNLTDTDMAMAMHNDDKNEHRKTMEDPHEIVWPHWISAADRRLLQSGTVSPNVVVAADGSGNFRTVSAAVAAAPESSSKRYVIRIKAGVYRENVDVPKKKTNIMFLGDGRTNTIITASRNVVDGSTTFNSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGADLSAFYRCDFLAYQDTLYVHSNRQFFISCYVAGTVDFIFGNSAAVIQNSDIHARRPNSGQKNMVTAQGRVDPNQNTGIVIQKSRIGATKDLESVKSSFPTFLGRPWKEYSRTVIMQSTISDVIDPAGWHEWNGNFALNTLFYGEYQNTGPGAATSRRVTWKGFKVITSAAEAQRFTPANFIAGSSWLPSTGFPFSLGL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2065g00009 581 Pfam Pectinesterase 270 566 IPR000070 GO:0030599|GO:0042545
Vium2065g00009 581 Pfam Plant invertase/pectin methylesterase inhibitor 62 217 IPR006501 GO:0004857
Vium2065g00009 581 Coils Coil 136 156 - -
Vium2065g00009 581 FunFam Pectinesterase 59 222 - -
Vium2065g00009 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 223 IPR035513 -
Vium2065g00009 581 CDD PMEI-like_3 65 222 - -
Vium2065g00009 581 SMART PMEI_2 58 217 IPR006501 GO:0004857
Vium2065g00009 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 222 IPR035513 -
Vium2065g00009 581 ProSitePatterns Pectinesterase signature 1. 295 314 IPR018040 -
Vium2065g00009 581 FunFam Pectinesterase 264 581 - -
Vium2065g00009 581 NCBIfam pectinesterase inhibitor domain 31 222 IPR006501 GO:0004857
Vium2065g00009 581 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Vium2065g00009 581 Gene3D - 264 581 IPR012334 -
Vium2065g00009 581 PANTHER PECTINESTERASE 35 571 - -
Vium2065g00009 581 SUPERFAMILY Pectin lyase-like 266 580 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2065g00009 Vium-Chr2065 23507 26630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2065g00009 10 581 Carbohydrate Esterase AT3G14310 66.216 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2065g00009 K01051 - jre:109013060 817.379