Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2064g00003 ATGGCCACGGAGCAGTTGATGTCCAGTGGCGGTCCTCGCTACGTTCAGATGAAATCCTCGCCACCGCCGTCTCCGCCGGCTGCGACTGCCGAGGAGATGTCATCGGTTCCGTCGTTCCGACACAGCGGCGCCGAGGCCAATCGGATTTTCGAGGAATTGCCGAAAGCCTCCATCGTCTCCGTGTCTCGCCCCGACGCCAGCGATATTAGCCCCATGCAACTCTCTTACACCATTCAGGTTCAGTACAGACAGTTCAAGTGGGAGTTAATGAAGAAAGCTCATCAAGTATTTATTTTGCATTTCGCATTAAAAAAACGTGCCTTCATTGAGGAAATCCATGAGAAGCAGGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATTGGAGAACACAATGCTATGGAGCAAGATGACGATGAAGGTGATGATGAAACAATCCCATTGCATACTGATGAAACTCATGAAAGTGCTATGGACAGAGATGTTCCATCTAGTGCTGCTCTACCAATTATACGACCAGCCTTGGGAAGACAGCAGTCTATTGCAGAGAGGGCAAAGAGAGCAATGCAAGGATATTTGAATCACTTTTTGGGAAATATCAGTATTGTGAATTCTCATGAGGTTTGCAAGTTTTTGGAGGTATCAAAGTTGTCTTTTTCACCTGAATATGGCCCCAAGCTAAAGGAAGAATATGTGATGGTGAAACATTTGCCCAAAATCCTGAAGGATGATGACTCCAGAAAGTGTTGTTTGTCTGACTGTTTCAGTTGCTGTAATGACAACTGGCAAAAGGTATGGGCTGTACTGAAACCTGGATTTTTGGCATTGCTGGCAGATCCTTTTGATACACAGCCTCTGGACATAATTGTTTTTGATGTACTGCCAGCCTCGGATGGGAATGGGGATGGTCGTTTATCACTGGCAAGTGAAATGAAGGAACGGAATCCATTACGCCATTCATTCAAGGTGGCTTGTGGAATCCGCAGTATCAGAATTAGAGTGAAAAGTAGAAGTAAAGTCAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTCAGGCCTCCGGAAGGCTGGTGTCATCCTCACCGTTATGGTTCATTTGCTCCTCCAAGAGGCTTAATTGAAGATGGAAGTCAAGCCCAGTGGTTTATTGATGGGCGAGCAGCATTTGAGGCCATTGCTTCTGCAATTGAGGCTGCAAAATCAGAGATATTTATCTGTGGGTGGTGGCTGTGCCCAGAACTGTATCTACGGCGACCTTTTCACACTCATGCTTCATCAAGGCTTGATAATTTGTTGGAAGGAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAAAAAGCTTCTTGGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCACACCATGAAAAACTTGTCATTATTGATAACCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAACGTAGGAGATTTCCCTCCTCTAACCTGGCCGGGAAAAGACTATTATAACCCAAGATCGTTCCCTATCGCCGGCGACGTCGATTCAATTTCAATGGCCACGGAGCAGTTGATGTCCAGTGGCGGTCCTCGCTACGTTCAGATGAAATCCTCGCCACCGCCGTCTCCGCCGGCTGCGACTGCCGAGGAGATGTCATCGGTTCCGTCGTTCCGACACAGCGGCGCCGAGGCCAATCGGATTTTCGAGGAATTGCCGAAAGCCTCCATCGTCTCCGTGTCTCGCCCCGACGCCAGCGATATTAGCCCCATGCAACTCTCTTACACCATTCAGGTTCAGTACAGACAGTTCAAGTGGGAGTTAATGAAGAAAGCTCATCAAGTATTTATTTTGCATTTCGCATTAAAAAAACGTGCCTTCATTGAGGAAATCCATGAGAAGCAGGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATTGGAGAACACAATGCTATGGAGCAAGATGACGATGAAGGTGATGATGAAACAATCCCATTGCATACTGATGAAACTCATGAAAGTGCTAAGGACAGAGATGTTCCATCTAGTGCTGCTCTACCAATTATACGACCAGCCTTGGGAAGACAGCAGTCTATTGCAGAGAGGGCAAAGAGAGCAATGCAAGGATATTTGAATCACTTTTTGGGAAATATCAGTATTGTGAATTCTCATGAGGTTTGCAAGTTTTTGGAGGTATCAAAGTTGTCTTTTTCACCTGAATATGGCCCCAAGCTAAAGGAAGAATATGTGATGGTGAAACATTTGCCCAAAATCCTGAAGGATGATGACTCCAGAAAGTGTTGTTTGTCTGACTGTTTCAGTTGCTGTAATGACAACTGGCAAAAGGTATGGGCTGTACTGAAACCTGGATTTTTGGCATTGCTGGCAGATCCTTTTGATACACAGCCTCTGGACATAATTGTTTTTGATGTACTGCCAGCCTCGGATGGGAATGGGGATGGTCGTTTATCACTGGCAAGTGAAATGAAGGAACGGAATCCATTACGCCATTCATTCAAGGTGGCTTGTGGAATCCGCAGTATCAGAATTAGAGTGAAAAGTAGAAGTAAAGTCAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTCAGGCCTCCGGAAGGCTGGTGTCATCCTCACCGTTATGGTTCATTTGCTCCTCCAAGAGGCTTAATTGAAGATGGAAGTCAAGCCCAGTGGTTTATTGATGGGCGAGCAGCATTTGAGGCCATTGCTTCTGCAATTGAGGCTGCAAAATCAGAGATATTTATCTGTGGGTGGTGGCTGTGCCCAGAACTGTATCTACGGCGACCTTTTCACACTCATGCTTCATCAAGGCTTGATAATTTGTTGGAAGGAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAAAAAGCTTCTTGGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCACACCATGAAAAACTTGTCATTATTGATAACCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGAGCATAACGTAGGAGATTTCCCTCCTCTAACCTGGCCGGGAAAAGACTATTATAACCCAAGAGAATCTGAACCAAATTCATGGGAAGATACAATGAAAGATGAATTGGATCGTGAGAAATATCCTCGTATGCCTTGGCACGATGTTCATTGTGCCCTTTGGGGACCACCTTGCCGTGACATTGCTAGGCACTTTGTTCAGCGATGGAATTATGCAAAGAGGAACAAAGCTTTATATGAGGAAGCAATACCATTACTAATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAAGAAGCCGAGAGATACAGATTCAAAGTGGGAACATAGACAATCAAACAGTTCTTAAAAGAGAAGATTCTTTTTCCTCATCTTCCCAAGACCAAGATATTCCTCTACTTTTGCCCCAGGAGTCTGATGGGTCGGATACTCATGAAGGAGACCAAAAGTTGAATGGTGTAATCTCCTCTTCACATTGCCTGGACAAGCCAAGAAGGATCAGCACTGGTCTCCCCTTTTCATTTCGCAAGGCTAAAATTGTAGCACTTGGTTCAGACACACCAATGAAGGGCTTTGTAGATGATCTGGATTCTGAGCATGATCGCGAGAAAATGTCTCTAGATAGAGTGGCTCATTCTGATTTGCAAAATACAGATCCAGAATGGTGGGAGACGCAAGAACGGGGTGACCAGGGAGGTTTTCCTGAGGAATCAGGACAAGTTGGTCCTCTTGCTTCCTGCCGTTGCCAAGTTATTAGGAGCGTGAGTCAATGGTCTGCGGGAACAAGTCAAACCGAAGAGAGCATCCATAGTGCTTATTGTTCTCTTATTGAGAAAGCTGAATACTTCATCTACATTGAGAATCAGTTTTTTATCTCAGGTCTTTCTGGGGATGAGATGATACGCAATCGTGTGTTAGAAGCTTTATACCGACGAATTATGCGAGCTTACAATGACAGAAAAACTTTCAGGGTTATAATTGTCATACCACTGCTGCCTGGCTTCCAGGGGGGCCTTGATGATAGTGGTGCAGCATCTGTAAGAGCCATAATGCACTGGCAGTATCGAACCATTTGCAGGGGGCAGAATTCTATCTTGCATAATCTTTATGAACTTCTTGGTCCTAAAATACATGACTACATCTCTTTCTATGGTCTAAGGTCTTATGGTAGACTTAATGGGGGTCCTGTGGCAACCAGCCAGGTGTATGTTCACAGTAAAATCATGATTGTTGATGACAGTATAACTTTGATTGGATCTGCTAATATTAATGATAGGAGCTTACTTGGCTCCAGAGATTCTGAGATTGCCGTAGTTATAGAAGACAGAGAGTTGATTGGTTCTTATATGGATGGAAAACCTTGGAAAGCTGGAAAGTTTTCCTTGACCCTTCGATTGTCCTTATGGTCTGAGCACTTGGGTCTCCCTACAGGAGAGGACAATCAAATAATGGACCCAGTTGTTGAATCTACTTACAAGGATATTTGGATGGCTACGGCAAAGACAAATACTACAATTTACCAGGATGTCTTTTCTTGCGTACCTAATGATCTGATACACACCAGACATGCCTTCAGACAAAGTGTGCTTTTTTGGAAAGAAAGGATTGGTCACACGACCATTGATTTAGGAATAGCCCCAGAAAAATTGGAATCCTATCGTGATGGAGGCATTAAGAACACCGATCCCTTGGAGAGATTAGCATCAGTGAAGGGTCACCTGGTCTCTTTTCCCTTGGAGTTCATGTGTCAGGAAAGTCTGAGACCTGCTTTTAATGAAAGCGAATACTACGCTACTCAAGTTTTCCATTGA 5022 0.4401 MATEQLMSSGGPRYVQMKSSPPPSPPAATAEEMSSVPSFRHSGAEANRIFEELPKASIVSVSRPDASDISPMQLSYTIQVQYRQFKWELMKKAHQVFILHFALKKRAFIEEIHEKQEQVKEWLQNLGIGEHNAMEQDDDEGDDETIPLHTDETHESAMDRDVPSSAALPIIRPALGRQQSIAERAKRAMQGYLNHFLGNISIVNSHEVCKFLEVSKLSFSPEYGPKLKEEYVMVKHLPKILKDDDSRKCCLSDCFSCCNDNWQKVWAVLKPGFLALLADPFDTQPLDIIVFDVLPASDGNGDGRLSLASEMKERNPLRHSFKVACGIRSIRIRVKSRSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLIEDGSQAQWFIDGRAAFEAIASAIEAAKSEIFICGWWLCPELYLRRPFHTHASSRLDNLLEGKAKQGVQIYILLYKEVALALKINSVYSKKKLLGIHENVRVLRYPDHFSTGVYLWSHHEKLVIIDNHICFIGGLDLCFGRYDTSEHNVGDFPPLTWPGKDYYNPRSFPIAGDVDSISMATEQLMSSGGPRYVQMKSSPPPSPPAATAEEMSSVPSFRHSGAEANRIFEELPKASIVSVSRPDASDISPMQLSYTIQVQYRQFKWELMKKAHQVFILHFALKKRAFIEEIHEKQEQVKEWLQNLGIGEHNAMEQDDDEGDDETIPLHTDETHESAKDRDVPSSAALPIIRPALGRQQSIAERAKRAMQGYLNHFLGNISIVNSHEVCKFLEVSKLSFSPEYGPKLKEEYVMVKHLPKILKDDDSRKCCLSDCFSCCNDNWQKVWAVLKPGFLALLADPFDTQPLDIIVFDVLPASDGNGDGRLSLASEMKERNPLRHSFKVACGIRSIRIRVKSRSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLIEDGSQAQWFIDGRAAFEAIASAIEAAKSEIFICGWWLCPELYLRRPFHTHASSRLDNLLEGKAKQGVQIYILLYKEVALALKINSVYSKKKLLGIHENVRVLRYPDHFSTGVYLWSHHEKLVIIDNHICFIGGLDLCFGRYDTSEHNVGDFPPLTWPGKDYYNPRESEPNSWEDTMKDELDREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKALYEEAIPLLMPQHHMVIPHYLGRSREIQIQSGNIDNQTVLKREDSFSSSSQDQDIPLLLPQESDGSDTHEGDQKLNGVISSSHCLDKPRRISTGLPFSFRKAKIVALGSDTPMKGFVDDLDSEHDREKMSLDRVAHSDLQNTDPEWWETQERGDQGGFPEESGQVGPLASCRCQVIRSVSQWSAGTSQTEESIHSAYCSLIEKAEYFIYIENQFFISGLSGDEMIRNRVLEALYRRIMRAYNDRKTFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGPKIHDYISFYGLRSYGRLNGGPVATSQVYVHSKIMIVDDSITLIGSANINDRSLLGSRDSEIAVVIEDRELIGSYMDGKPWKAGKFSLTLRLSLWSEHLGLPTGEDNQIMDPVVESTYKDIWMATAKTNTTIYQDVFSCVPNDLIHTRHAFRQSVLFWKERIGHTTIDLGIAPEKLESYRDGGIKNTDPLERLASVKGHLVSFPLEFMCQESLRPAFNESEYYATQVFH 1673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2064g00003 1673 MobiDBLite consensus disorder prediction 562 587 - -
Vium2064g00003 1673 MobiDBLite consensus disorder prediction 1 15 - -
Vium2064g00003 1673 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1470 1497 IPR001736 GO:0003824
Vium2064g00003 1673 Pfam PLD-like domain 1344 1517 IPR025202 -
Vium2064g00003 1673 MobiDBLite consensus disorder prediction 698 712 - -
Vium2064g00003 1673 MobiDBLite consensus disorder prediction 685 713 - -
Vium2064g00003 1673 Gene3D - 806 903 IPR011993 -
Vium2064g00003 1673 Gene3D - 255 352 IPR011993 -
Vium2064g00003 1673 SUPERFAMILY PH domain-like 258 350 - -
Vium2064g00003 1673 CDD PLDc_vPLD1_2_yPLD_like_1 380 524 - -
Vium2064g00003 1673 MobiDBLite consensus disorder prediction 1 38 - -
Vium2064g00003 1673 SMART pld_4 487 514 IPR001736 GO:0003824
Vium2064g00003 1673 SMART pld_4 1038 1065 IPR001736 GO:0003824
Vium2064g00003 1673 SMART pld_4 1470 1497 IPR001736 GO:0003824
Vium2064g00003 1673 MobiDBLite consensus disorder prediction 1188 1203 - -
Vium2064g00003 1673 Gene3D Endonuclease Chain A 925 1160 - -
Vium2064g00003 1673 Coils Coil 656 676 - -
Vium2064g00003 1673 Coils Coil 105 125 - -
Vium2064g00003 1673 Pfam Phospholipase D Active site motif 487 514 IPR001736 GO:0003824
Vium2064g00003 1673 Pfam Phospholipase D Active site motif 1038 1065 IPR001736 GO:0003824
Vium2064g00003 1673 CDD PH_PLD 754 901 - -
Vium2064g00003 1673 CDD PH_PLD 203 350 - -
Vium2064g00003 1673 SUPERFAMILY PH domain-like 809 901 - -
Vium2064g00003 1673 SMART PH_update 226 354 IPR001849 -
Vium2064g00003 1673 SMART PH_update 777 905 IPR001849 -
Vium2064g00003 1673 FunFam Phospholipase 1305 1524 - -
Vium2064g00003 1673 CDD PLDc_vPLD1_2_yPLD_like_1 931 1075 - -
Vium2064g00003 1673 PANTHER PHOSPHOLIPASE D 717 1663 IPR015679 -
Vium2064g00003 1673 MobiDBLite consensus disorder prediction 1188 1221 - -
Vium2064g00003 1673 CDD PLDc_vPLD1_2_yPLD_like_2 1331 1514 - -
Vium2064g00003 1673 SUPERFAMILY Phospholipase D/nuclease 886 1157 - -
Vium2064g00003 1673 Gene3D Endonuclease Chain A 374 526 - -
Vium2064g00003 1673 SUPERFAMILY Phospholipase D/nuclease 335 521 - -
Vium2064g00003 1673 Gene3D Endonuclease Chain A 1297 1530 - -
Vium2064g00003 1673 SUPERFAMILY Phospholipase D/nuclease 1311 1520 - -
Vium2064g00003 1673 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1038 1065 IPR001736 GO:0003824
Vium2064g00003 1673 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 487 514 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2064g00003 Vium-Chr2064 36269 52568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2064g00003 1 539 Phospholipase D Gene Family (Wang group) AT3G16785 75.092 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2064g00003 K01115 - gmx:100780514 2147.47