Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2064g00002 ATGTGTGGAGGTGCAATTATTTCCGACTTCATCGGTGTCAAGCGTGACCGTAAAGTCGCCGCGGAGCAGCTGTGGTCCGAGCTAGACCCTTTCTCTGACCTCCTCGGCTTCGACATCACCACCACAACCACTTCCAAACGCCAACCACCCTTCCCCGTAATCTCAGACAAAAAGGTGGAATCATGTGCCAAGAAGAAGAAAAGCGTGGATGCAGGGAAGAAGAGTGAGCGTGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGGAAATGGGCTGCAGAAATAAGGGACCCACACAAGGGTGTCCGCGTTTGGCTCGGCACCTTCCCCACCGCCGAGGAAGCCGCCAGAGCCTACGACGCCGCCGCCAAACGCATCCGTGGTGACAAGGCCAAACTCAACTTCCCCGACGACACTCCACCACCCTCCAAGAAGCGCTGCCTCAGCCCCGACCTCCCTCAACAGAGCAGCTCCTCTTCCACCGCACCACCGCCTTCCGCCGTCTCCTACAGCGGAGACAGCAGCGGAGGAGAGGAACTCGACCTCAAACAACTTGAACTCTTTCTTGGCTTAGAGAATGAGCAGCCTCTGCCCAACAATGGTGTGGAATGGGACAACGGTTACGTGATGGATGACTTGTGGATGCTCGACGACGTCGTTGTGGCCAACCGTAATCTAGTTTATTAG 696 0.5632 MCGGAIISDFIGVKRDRKVAAEQLWSELDPFSDLLGFDITTTTTSKRQPPFPVISDKKVESCAKKKKSVDAGKKSERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDAAAKRIRGDKAKLNFPDDTPPPSKKRCLSPDLPQQSSSSSTAPPPSAVSYSGDSSGGEELDLKQLELFLGLENEQPLPNNGVEWDNGYVMDDLWMLDDVVVANRNLVY 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2064g00002 231 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Vium2064g00002 231 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Vium2064g00002 231 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Vium2064g00002 231 PANTHER DNA-BINDING DOMAIN 64 169 IPR044808 GO:0003700|GO:0009873
Vium2064g00002 231 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Vium2064g00002 231 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Vium2064g00002 231 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Vium2064g00002 231 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Vium2064g00002 231 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Vium2064g00002 231 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Vium2064g00002 231 MobiDBLite consensus disorder prediction 152 176 - -
Vium2064g00002 231 MobiDBLite consensus disorder prediction 133 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2064g00002 Vium-Chr2064 22943 25083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2064g00002 1 225 AP2-EREBP Transcription Factor Family AT3G16770 46.970 6.68e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2064g00002 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2064g00002 K09286 - gmx:100779626 279.256