Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2062g00012 ATGGAGATGGAAGATTACGCGAGCAGTGATGAGGATTACCATTACGACTCCGATCAAGATGACTCCGTCGAGGCCTACGAAAAAACGACCGAGGATTAGCTTACTCTCTTCCAAGGGTCCACAACCAAGGTGATTACTAAGGAATCACTTTTGGTTGCACAGAGGGAGGATTTGCGCAGAGTAATGGAGATGCTATCGGTAAGAGAGCAACACGCTCGTACACTGCTAATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTATATGTAGACACGGGGGAAGCATTTCTCTGTGGTGGCGGTGTTACTGTGGATGAACCCGACTATGACTCATCCGTGCCTTCTACAGTAATGTGCTACATCTGCATGGAGGATGTTGCTAGGGTCGAAACAACAAGAATGGATTGTGGTCATTGCTTTTGCAACTCCTGTTGGATTGAGCATTTTATTGTTAAAATAAATGAGGGTCAAAGTAAACGTATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGCTGTGGTTAGAACTCTACTCAGTAGAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCTTACATTGAAGACAATAAAAGAGTTAAATGGTGTCCCAGTACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAATTGTGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGTTTTAGGTGCTTGTCAGAAGCACACTCACCTTGTTCATGCCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAGTCAGAAACTGTTAATTGGATAACCGTTCATACAAAACCATGCCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGTTGTGCGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAAAAAACGGCAGAACGTGCAAAGAGGGATCTATATCGGTATATGCATTATCATAACCGGTATAAAGCTCACACAGACTCCTTTAAGATTGAAAGCAAACTGAAAGAAACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGTCTCTCCAGACTTTTCAGATCTAGGAGAGTCCTATCCTATTCATATGCTTTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAATTTATTTGAAGATCAACAGCAGCAGCTCGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTGGAGATAAGAATGCAGATTCTCAACCTCTCAACAATTATTGATAAGCTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTCCATCTTGGCATTCATAGTATCGCTCCATACAAGTCAAAGGGCATCGAGAGGGCTTCAGAACTTTCAGTTTGCTGGAACAATAAAGTAAATACTGGTGTAACAGCAGAACTTGATCGGCCTTCGGGATCAGGGAGTTCAGATGATAATGGATGCTCTTCTCGTAAACGTGCTAGAAAAGATGGTGTTGGAGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1737 0.4145 MEMEDYASSDEDYHYDSDQDDSVEAYEKTTEDYXLTLFQGSTTKVITKESLLVAQREDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDTGEAFLCGEXGVTVDEHXDYDSSVPSTVMCYICMEDVARVETTRMDCGHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKVNTGVTAELDRPSGSGSSDDNGCSSRKRARKDGVGGGFFDLNLPAEFVDRN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2062g00012 581 CDD Rcat_RBR_ARI1-like 277 330 - -
Vium2062g00012 581 ProSiteProfiles Zinc finger RING-type profile. 123 171 IPR001841 -
Vium2062g00012 581 ProSiteProfiles TRIAD supradomain profile. 119 333 IPR044066 -
Vium2062g00012 581 FunFam RBR-type E3 ubiquitin transferase 252 499 - -
Vium2062g00012 581 Gene3D - 252 499 - -
Vium2062g00012 581 MobiDBLite consensus disorder prediction 1 22 - -
Vium2062g00012 581 CDD BRcat_RBR_ANKIB1 201 265 - -
Vium2062g00012 581 Pfam Ariadne domain 333 581 IPR045840 -
Vium2062g00012 581 SUPERFAMILY RING/U-box 194 262 - -
Vium2062g00012 581 MobiDBLite consensus disorder prediction 537 552 - -
Vium2062g00012 581 CDD RING-HC_RBR_TRIAD1 121 174 - -
Vium2062g00012 581 SMART ibrneu5 194 256 IPR002867 GO:0008270
Vium2062g00012 581 SMART ibrneu5 264 329 IPR002867 GO:0008270
Vium2062g00012 581 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 400 IPR031127 GO:0004842|GO:0016567
Vium2062g00012 581 SUPERFAMILY RING/U-box 119 206 - -
Vium2062g00012 581 MobiDBLite consensus disorder prediction 8 22 - -
Vium2062g00012 581 SUPERFAMILY RING/U-box 264 321 - -
Vium2062g00012 581 MobiDBLite consensus disorder prediction 537 558 - -
Vium2062g00012 581 FunFam RBR-type E3 ubiquitin transferase 118 208 - -
Vium2062g00012 581 Pfam IBR domain, a half RING-finger domain 194 256 IPR002867 GO:0008270
Vium2062g00012 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 209 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2062g00012 Vium-Chr2062 33773 37601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2062g00012 63 545 ARIADNE family AT2G16090 70.637 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2062g00012 K11968 - gmx:100783343 1061.21