Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2059g00008 ATGCCAAAGATGAAGCACCTTCTCAGAAAGCTTCACATCGGTGGTGGCGCTGCCACCATCAATCACAATCACAATCATAACGCATTGTCCTCGCACGAGCATCACGCTCCCTCCACTTCCACGCTCTCTTCGCCCACCATAGTTTCGGATCCGACGCCGACTCGGAGCCCCGTTGTGGAGGCGCAGAACGACGTGGTGGAGTTCAACTTGTTGCAGGAGGAGGAGTTTCAGATGCAACTAGCGCTCGCAATCAGCGCTTCCGATTCCGATCGCCGTGACACCGCGGAATCTGCGCAGATCGACGCCGCAAAACAGATCAGCCTCGGTTACTCTGCTTCGTTCACTGACACTCATGCCCTAGTTCAGTTTCAATCGCTTCGTTATTGGAACTACAATGTGATTGGTTATGATGAGAAAGTGATGGATGGGTTTTATGATGTGTTTGGGGTTACCTCGAATTTGGTTGATCGAGGGAAGATGCCATTGTTGGTGGATCTGCAGACGGCTCCTGTCTCAGGAGATGTCGATTGTGAGGTGATTTTGGTGAACCATGTTGTAGATCTTGAGCTTAATCAGCTTGAGAGGAAGGCGTGTAGTTTGGTTGAGGAGTGTTGTGTTTCTGAACTGGGGCTGATTTTGAGTGGCTTGCTTCAGAAGCTCGCGGATGTTGTTGTTAATAGAATGGGTGGACCTGTTACTAATGCTGAGAAACTTACTAAGAGTTGGGCTATGAGGAGTCGTGAGTTACGGGATTCTATGCAAACCATTGTTCTTCCCCTTGGCTGTCTTGATGTTGGACTTTCACGTCACCGAGCCCTACTTTTTAAGGTACTTGCTGATAGGATTAACATTCCCTGCATGCTGGTAAAAGGGAGCTATTATACAGGAACTGATGATGGGGCTGTGAATATGATTAAAGCTGATGATGGAAGTGAGTACATCATTGATATGATGGGTGCCCCTGGAACTCTTATTCCTGCTGAGGTACCCAGCAGCCAGCTCGAAAGCACCAGTTTTTCTGTTAGGGGTTGTGCAGAGATTGTTGGATTACCAGAGAAGACAGGTTCAATTGTAGATGATGGAACTGGTGCGCCAGGAGTCTTTTCTGATTGTGGTAGAATTTCAACAGTGGGGAGAGTCCGGACAGAAGAATTATTAGTTATGGGCAGTCAAACAGAGCCTGATGAAATTAATCATGTTAAAGTAAATGAGACAAGGAGATTTGAACATACAGAAGCATACGAATGCTCATCACATACAGGACCATCACCTGCAGAGAATATGCATGTAAAAAATGTCTCTAAGTATGTTCTCAGTGCAGCAAAGGACCCAGAATTTGCCCAAAAATTACATAATGTTCTACTAGAGAGTGGTGCCTTACCTCCGCCTGATCTTTTTTCAAATATAAATTCCCAGGATAGGGGTGTAGATAAAGTTAATGAAAAAAATGTTGATTCTGTTCAAGATGACACAAATAGATTATTATTATTAAGGTATGAAAAATCTCACATGCCCTCACATGGGTTGGGCTCTGCCAGTGATACTAGGTTATGTCAATCAGCTGACTGCTTAGCTGAACAACAAAAAGAATTGCACACAGATGTTGAATTTTGCAATTCTTCACAGAGTGATAATATAAGGAACGGGTTTTTACATGCTTCTGATAGGGATATTGATTTAGAGAAATCTAACGCAATGAATGTTGTTTTGGCTTCTATACACTCACATAATAAGTTATGTAAAGAAAAGTGTACTGGATCTTCTTTGCCCAAGGCAGCTCTTTCCTGTAAAGTGGATAATGGAATTGGTTGTTTCTGTGAAGATGATGAAAATGGCTATGGAAAGAATGTAGGAGTTTCTTTTAATAACAGAGGGTTGGGCAAAGATTCAGCTGTTCAGAGAAATGAGATGGAGGTTAATGGAGAATGCTATGATGGTAGAAACAAGGAAGTTAACCAAGTGCTTGGTGAAGGCTCAGAATGGGAAATTCAATGGGAGGATCTTGATATTGGTGAGCGTATTGGTATTGGTTCGTATGGTGAAGTTTATCGTGCCGATTGCAATGGCACTGAAGTTGCCGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAGTTCAAATCTGAAGTTGAGATCATGCTAAGGCTGCGACATCCTAATGTTGTGCTCTTCATGGGAGCAATTACTCGGCCCCCACATTTCTCGATCTTGACCGAATTTCTTCCAAGAGGCAGTTTATATAGGCTACTGCATCGTCCCAATATTCGGCTTGATGAGAAGAAAAGGTTGCGCATGGCTCTAGATGTGGCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTACACCGAGATTTGAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGATTGTTAAGGTTTGTGATTTTGGTCTGTCAAGAATGAAGCACCATACATTTTTGTCATCAAAATCTTGTGCTGGAACGCCTGAGTGGATGGCACCGGAAGTCTTAAGAAATGAGCCAGCCAATGAGAAGTGTGATGTATATAGTTTTGGTGTGATCTTGTGGGAGTTGATTACTACAAGAATTCCCTGGAAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAACAAACGGCTTGAAATTCCAGAAGATGTCAATCCAGTAGTAGCACAGATTATACGTGATTGCTGGCAAACGGAGCCACACTTGCGGCCATCTTTCTCACAGCTGATGTCTCGTCTTTACCGTGTTCAACATATGGTTGCCCCAAAAACGGGTTCAACACATTAA 2808 0.4366 MPKMKHLLRKLHIGGGAATINHNHNHNALSSHEHHAPSTSTLSSPTIVSDPTPTRSPVVEAQNDVVEFNLLQEEEFQMQLALAISASDSDRRDTAESAQIDAAKQISLGYSASFTDTHALVQFQSLRYWNYNVIGYDEKVMDGFYDVFGVTSNLVDRGKMPLLVDLQTAPVSGDVDCEVILVNHVVDLELNQLERKACSLVEECCVSELGLILSGLLQKLADVVVNRMGGPVTNAEKLTKSWAMRSRELRDSMQTIVLPLGCLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNMIKADDGSEYIIDMMGAPGTLIPAEVPSSQLESTSFSVRGCAEIVGLPEKTGSIVDDGTGAPGVFSDCGRISTVGRVRTEELLVMGSQTEPDEINHVKVNETRRFEHTEAYECSSHTGPSPAENMHVKNVSKYVLSAAKDPEFAQKLHNVLLESGALPPPDLFSNINSQDRGVDKVNEKNVDSVQDDTNRLLLLRYEKSHMPSHGLGSASDTRLCQSADCLAEQQKELHTDVEFCNSSQSDNIRNGFLHASDRDIDLEKSNAMNVVLASIHSHNKLCKEKCTGSSLPKAALSCKVDNGIGCFCEDDENGYGKNVGVSFNNRGLGKDSAVQRNEMEVNGECYDGRNKEVNQVLGEGSEWEIQWEDLDIGERIGIGSYGEVYRADCNGTEVAVKKFLDQDFSGDALAQFKSEVEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYRLLHRPNIRLDEKKRLRMALDVAKGMNYLHTSHPPIVHRDLKSPNLLVDRHWIVKVCDFGLSRMKHHTFLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELITTRIPWKGLNPMQVVGAVGFQNKRLEIPEDVNPVVAQIIRDCWQTEPHLRPSFSQLMSRLYRVQHMVAPKTGSTH 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2059g00008 935 SUPERFAMILY Protein kinase-like (PK-like) 658 921 IPR011009 -
Vium2059g00008 935 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 148 923 - -
Vium2059g00008 935 Gene3D Phosphorylase Kinase; domain 1 661 745 - -
Vium2059g00008 935 PRINTS Tyrosine kinase catalytic domain signature 742 755 IPR001245 GO:0004672|GO:0006468
Vium2059g00008 935 PRINTS Tyrosine kinase catalytic domain signature 828 838 IPR001245 GO:0004672|GO:0006468
Vium2059g00008 935 PRINTS Tyrosine kinase catalytic domain signature 781 799 IPR001245 GO:0004672|GO:0006468
Vium2059g00008 935 PRINTS Tyrosine kinase catalytic domain signature 847 869 IPR001245 GO:0004672|GO:0006468
Vium2059g00008 935 PRINTS Tyrosine kinase catalytic domain signature 891 913 IPR001245 GO:0004672|GO:0006468
Vium2059g00008 935 FunFam Serine/threonine-protein kinase CTR1 747 930 - -
Vium2059g00008 935 Pfam Protein tyrosine and serine/threonine kinase 669 920 IPR001245 GO:0004672|GO:0006468
Vium2059g00008 935 ProSiteProfiles Protein kinase domain profile. 668 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2059g00008 935 SMART serkin_6 668 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2059g00008 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Vium2059g00008 935 CDD STKc_MAP3K-like 674 920 - -
Vium2059g00008 935 FunFam Serine/threonine-protein kinase isoform 1 659 746 - -
Vium2059g00008 935 MobiDBLite consensus disorder prediction 21 56 - -
Vium2059g00008 935 ProSitePatterns Protein kinases ATP-binding region signature. 674 696 IPR017441 GO:0005524
Vium2059g00008 935 Pfam Ethylene-responsive protein kinase Le-CTR1 122 325 - -
Vium2059g00008 935 Gene3D Transferase(Phosphotransferase) domain 1 747 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2059g00008 Vium-Chr2059 30869 39752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2059g00008 620 926 MAP Kinase Kinase Kinase AT5G11850 78.065 1.48e-173 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium2059g00008 PK_Tyr_Ser-Thr 9.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2059g00008 K04424 - gmx:100779137 1598.18