Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2058g00003 ATGGGGGATACGAAGAACGAGGCGTACGAGGAGGACCTTCTTGACTATGAAGACGAAGAAGAGAAGGAGCCTGAAGGTGCTAATAAAGTCAACGGTGAAGCTGTCAAGAAGGGTTATGTTGGAATTCACAGTTCAGGATTCAGAGATTTTTTACTGAAGCCAGAACTTCTTCGGGCTATAGTGGACTCTGGATTTGAGCACCCTTCTGAAGTGCAACATGAGTGTATACCTCAAGCTATACTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTATTTGTTCTATCTACCCTGCAGCAGATTGACCCTGTTGCCGGGCAAGTTTCTGCACTTGTCTTATGTCATACAAGGGAATTAGCATACCAGATATGCAACGAATTTGAAAGGTTTAGCACCTACCTACCCGATCTAAAGGTTGCTGTCTTTTATGGTGGCGTCAACATAAAAGTTCACAAGGATCTATTGAAGAACGAATGCCCTAGTATTGTTGTTGGTACACCTGGAAGAATACTTGGATTGGCTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGACATTTCATTTTAGATGAATGTGATAAGATGCTAGAATCTCTGGACATGAGAAAAGATGTGCAAGCTATTTTCAAGATGACACCCCATGATAAGCAAGTTATGATGTTTTCTGCAACGCTCAGCAAGGAAATACGTCCTGTCTGCAAAAAATTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAAGCAAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAACGACCTTCTTGATGCATTGGACTTCAATCAAATTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCGGAGCTGGACAAACTGCTTAGAGAATGCAACTTCCCATCTATTTGCATTCATTCTGGAATGTCTCAAGAAGAAAGGTTAAAACGATATAAAGGTTTTAAGGAGGGTCATACAAGAATTCTAGTTGCAACAGATTTGGTTGGTAGGGGTATCGATATCGAACGTGTGAATATAGTTATAAACTATGACATGCCGGATTCTGCTGATACGTACTTGCACAGGGTTGGCCGCGCTGGACGATTTGGAACCAAGGGCCTTGCAATTACATTTGTTTCATGTTCCACTGATGTTGATGTTCTCAACAATGTTCAATCCAGGTTTGAAGTTGATATAAAGCAGCTTCCTGAGCAGATTGATACAGCTAGCTACATGCCATCCTAG 1281 0.4114 MGDTKNEAYEEDLLDYEDEEEKEPEGANKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICNEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLRECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTASYMPS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2058g00003 426 CDD SF2_C_DEAD 262 391 - -
Vium2058g00003 426 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 400 - -
Vium2058g00003 426 MobiDBLite consensus disorder prediction 1 29 - -
Vium2058g00003 426 CDD DEADc_DDX39 44 251 - -
Vium2058g00003 426 FunFam DEAD-box ATP-dependent RNA helicase 56-like 33 251 - -
Vium2058g00003 426 Pfam Helicase conserved C-terminal domain 275 382 IPR001650 -
Vium2058g00003 426 FunFam DEAD-box ATP-dependent RNA helicase 258 426 - -
Vium2058g00003 426 Pfam DEAD/DEAH box helicase 70 235 IPR011545 GO:0003676|GO:0005524
Vium2058g00003 426 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
Vium2058g00003 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 396 IPR027417 -
Vium2058g00003 426 Gene3D - 258 425 IPR027417 -
Vium2058g00003 426 Gene3D - 41 257 IPR027417 -
Vium2058g00003 426 SMART ultradead3 64 265 IPR014001 -
Vium2058g00003 426 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 261 422 IPR001650 -
Vium2058g00003 426 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 249 IPR014001 -
Vium2058g00003 426 SMART helicmild6 301 382 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2058g00003 Vium-Chr2058 27429 36025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2058g00003 1 426 Eukaryotic Initiation Factors Gene Family AT5G11200 82.265 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2058g00003 K12812 - gmx:100796232 781.556