Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2058g00002 ATGGGGGATACGAAGAACGAGGCGTACGAGGAGGACCTTCTTGACTATGAAGACGAAGAAGAGAAGGAGCCTGAAGGTGCTAATAAAGTCAACGGTGAAGCTGTCAAGAAGGGTTATGTTGGAATTCACAGTTCAGGATTCAGAGATTTTTTACTGAAGCCAGAACTTCTTCGGGCTATAGTGGACTCTGGATTTGAGCACCCTTCTGAAGGTAATATTTTAAATCGTAATCTTCTTTTGGAGAACTATTATACGTTGGTAAATCTCTCAAAGGTTTGTTTTACTTACCGTTGGACCTCTATTTTCTTTGGTTCGCCACCAGTGCAACATGAGTGTATACCTCAAGCTATACTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTATTTGTTCTATCTACCCTGCAGCAGATTGACCCTGTTGCCGGGCAAGTTTCTGCACTTGTCTTATGTCATACAAGGGAATTAGCATACCAGATATGCAACGAATTTGAAAGGTTTAGCACCTACCTACCCGATCTAAAGGTTGCTGTCTTTTATGGTGGCGTCAACATAAAAGTTCACAAGGATCTATTGAAGAACGAATGCCCTAGTATTGTTGTTGGTACACCTGGAAGAATACTTGGATTGGCTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGACATTTCATTTTAGATGAATGTGATAAGATGCTAGAATCTCTGGACATGAGAAAAGATGTGCAAGCTATTTTCAAGATGACACCCCATGATAAGCAAGTTATGATGTTTTCTGCAACGCTCAGCAAGGAAATACGTCCTGTCTGCAAAAAATTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAAGCAAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAACGACCTTCTTGATGCATTGGACTTCAATCAAATTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCGGAGCTGGACAAACTGCTTAGAGAATGCAACTTCCCATCTATTTGCATTCATTCTGGAATGTCTCAAGAAGAAAGGTTAAAACGATATAAAGGTTTTAAGGAGGGTCATACAAGAATTCTAGTTGCAACAGATTTGGTTGGTAGGGGTATCGATATCGAACGTGTGAATATAGTTATAAACTATGACATGCCGGATTCTGCTGATACGTACTTGCACAGGGTTGGCCGCGCTGGACGATTTGGAACCAAGGGCCTTGCAATTACATTTGTTTCATGTTCCACTGATGTTGATGTTCTCAACAATGTTCAATCCAGGTTTGAAGTTGATATAAAGCAGCTTCCTGAGCAGATTGATACAGCTAGCTACATGCCATCCTAG 1392 0.4059 MGDTKNEAYEEDLLDYEDEEEKEPEGANKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGNILNRNLLLENYYTLVNLSKVCFTYRWTSIFFGSPPVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICNEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLRECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTASYMPS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2058g00002 463 FunFam DEAD-box ATP-dependent RNA helicase 56-like 97 288 - -
Vium2058g00002 463 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 437 - -
Vium2058g00002 463 CDD DEADc_DDX39 44 288 - -
Vium2058g00002 463 MobiDBLite consensus disorder prediction 1 29 - -
Vium2058g00002 463 FunFam DEAD-box ATP-dependent RNA helicase 295 463 - -
Vium2058g00002 463 SMART helicmild6 338 419 IPR001650 -
Vium2058g00002 463 Gene3D - 295 462 IPR027417 -
Vium2058g00002 463 Gene3D - 41 294 IPR027417 -
Vium2058g00002 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 433 IPR027417 -
Vium2058g00002 463 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 286 IPR014001 -
Vium2058g00002 463 Pfam DEAD/DEAH box helicase 107 272 IPR011545 GO:0003676|GO:0005524
Vium2058g00002 463 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 459 IPR001650 -
Vium2058g00002 463 Pfam Helicase conserved C-terminal domain 312 419 IPR001650 -
Vium2058g00002 463 CDD SF2_C_DEAD 299 428 - -
Vium2058g00002 463 SMART ultradead3 102 302 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2058g00002 Vium-Chr2058 27429 36025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2058g00002 1 463 Eukaryotic Initiation Factors Gene Family AT5G11200 76.238 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2058g00002 K12812 - gmx:100796232 763.066