Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2055g00010 ATGGAAGAGCAAAGTAATGAAGAGAACCCTGTGCAACTAACATCCTGTGCCACTGGGGGCACAGCCAATGATGTCTCTCACTCAGCTGAGGGTCATCTCATTCCCAACCCAAAATTTTTCATTGCAGCATCATCTGGAAGAAATGAGAGCCACTGGACTTGCTTTCCAAAACCATCCCATAACTATGTTAAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACACTTCCACTGATTACATGATGGGGGGTAGTTATCTACCTGTTGGCAGCATCACTGATGGCAACGTGGTTAATGGATCAGACAGAAACTTCTTTTACAATGATCCAGGGAAAGTCTGTGCCTTTAAGCCTATTGGTTCTTCAAGTAATGACCTTGACATTAAGAAGCAGGTGGGGTTTTGGAGGGCTGATGAAGGAGAGGAAGTGATTAAAGTTGAAACTGAAAGTAGTCAAAATTTTCTTTATGCTGAGAGTCATCCTTTATGGACAGCAGATTCTCTTGGAGATAAGCATAATGCTTTACATGATCCAATGGTAATGGTTGGTGCACCTGCTTCACTTCCCAAATCAGGATCCAGCTCCTCAAAAGAGAAAGCACGTGTCACTGACCGTCAACGCAGGCAACGTATCGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCCAGCAGAGGGAAGTCAAGCGTACATACTAGACGATATTATTGACTATGTCAAATATTTACAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGAAGAATCAACTGGTATACCACTAGTTTTTCATGAGGGTTACGGTCATTATATCAACCAACAGATGCTGAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTCTGCAGCAGCCGGTCAGCTACTAGAGAGCAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGATTTGAGTGAGGCTATGCAAACGTTTGGCGAGAGTGCTCTAGTCTGA 999 0.4294 MEEQSNEENPVQLTSCATGGTANDVSHSAEGHLIPNPKFFIAASSGRNESHWTCFPKPSHNYVKYLSESSTYLPNTSTDYMMGGSYLPVGSITDGNVVNGSDRNFFYNDPGKVCAFKPIGSSSNDLDIKKQVGFWRADEGEEVIKVETESSQNFLYAESHPLWTADSLGDKHNALHDPMVMVGAPASLPKSGSSSSKEKARVTDRQRRQRIADNLKALHELLPNPAEGSQAYILDDIIDYVKYLQLQIKEQSGSRLQEESTGIPLVFHEGYGHYINQQMLNEPLEEIMGKLLEEHSAAAGQLLESKGLFLLPMALVDDLSEAMQTFGESALV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2055g00010 332 CDD bHLH_AtbHLH_like 203 250 IPR045239 -
Vium2055g00010 332 MobiDBLite consensus disorder prediction 1 21 - -
Vium2055g00010 332 MobiDBLite consensus disorder prediction 186 206 - -
Vium2055g00010 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 255 IPR036638 GO:0046983
Vium2055g00010 332 MobiDBLite consensus disorder prediction 7 21 - -
Vium2055g00010 332 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 315 - -
Vium2055g00010 332 Pfam Helix-loop-helix DNA-binding domain 197 245 IPR011598 GO:0046983
Vium2055g00010 332 Gene3D - 193 262 IPR036638 GO:0046983
Vium2055g00010 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Vium2055g00010 332 SMART finulus 201 250 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2055g00010 Vium-Chr2055 70216 72644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2055g00010 202 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 39.837 2.42e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2055g00010 HLH 8.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2055g00010 - - gmx:100788949 463.381