Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2055g00009 ATGGAAGAGCAAAGTAATGAAGAGAACCCTGTGCAACTAACATCCTGTGCCACTGGGGGCACAGCCAATGATGTCTCTCACTCAGCTGAGGGTCATCTCATTCCCAACCCAAAATTTTTCATTGCAGCATCATCTGGAAGAAATGAGAGCCACTGGACTTGCTTTCCAAAACCATCCCATAACTATGTTAAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACACTTCCACTGATTACATGATGGGGGGTAGTTATCTACCTGTTGGCAGCATCACTGATGGCAACGTGGTTAATGGATCAGACAGAAACTTCTTTTACAATGATCCAGGGAAAGTCTGTGCCTTTAAGCCTATTGGTTCTTCAAGTAATGACCTTGACATTAAGAAGGTGGGGTTTTGGAGGGCTGATGAAGGAGAGGAAGTGATTAAAGTTGAAACTGAAAGTAGTCAAAATTTTCTTTATGCTGAGAGTCATCCTTTATGGACAGCAGATTCTCTTGGAGATAAGCATAATGCTTTACATGATCCAATGGTAATGGTTGGTGCACCTGCTTCACTTCCCAAATCAGGATCCAGCTCCTCAAAAGAGAAAGCACGTGTCACTGACCGTCAACGCAGGCAACGTATCGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCCAGCAGAGGGAAGTCAAGCGTACATACTAGACGATATTATTGACTATGTCAAATATTTACAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGAAGAATCAACTGGTATACCACTAGTTTTTCATGAGGGTTACGGTCATTATATCAACCAACAGATGCTGAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTCTGCAGCAGCCGGTCAGCTACTAGAGAGCAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGATTTGAGTGAGGCTATGCAAACGTTTGGCGAGAGTGCTCTAGTCTGA 996 0.4287 MEEQSNEENPVQLTSCATGGTANDVSHSAEGHLIPNPKFFIAASSGRNESHWTCFPKPSHNYVKYLSESSTYLPNTSTDYMMGGSYLPVGSITDGNVVNGSDRNFFYNDPGKVCAFKPIGSSSNDLDIKKVGFWRADEGEEVIKVETESSQNFLYAESHPLWTADSLGDKHNALHDPMVMVGAPASLPKSGSSSSKEKARVTDRQRRQRIADNLKALHELLPNPAEGSQAYILDDIIDYVKYLQLQIKEQSGSRLQEESTGIPLVFHEGYGHYINQQMLNEPLEEIMGKLLEEHSAAAGQLLESKGLFLLPMALVDDLSEAMQTFGESALV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2055g00009 331 SMART finulus 200 249 IPR011598 GO:0046983
Vium2055g00009 331 MobiDBLite consensus disorder prediction 1 21 - -
Vium2055g00009 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 254 IPR036638 GO:0046983
Vium2055g00009 331 Gene3D - 192 261 IPR036638 GO:0046983
Vium2055g00009 331 MobiDBLite consensus disorder prediction 7 21 - -
Vium2055g00009 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 73 314 - -
Vium2055g00009 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Vium2055g00009 331 Pfam Helix-loop-helix DNA-binding domain 196 244 IPR011598 GO:0046983
Vium2055g00009 331 CDD bHLH_AtbHLH_like 202 249 IPR045239 -
Vium2055g00009 331 MobiDBLite consensus disorder prediction 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2055g00009 Vium-Chr2055 70216 72644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2055g00009 201 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 39.837 2.25e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2055g00009 HLH 8.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2055g00009 - - gmx:100788949 468.003