Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2055g00007 ATGACCATCTCAATGTTCATGTGCAAATTAAGACAACCCATGATAAACATTCCCTGCAGTGGCAAAAAACTGAACGTCAGACAAATTGAGAAAGAGAAAGTAGTGGTTGTAATGGGAGCCACAGGGGCAGGGAAGTCAAGGCTGTCGATTGACATAGCCTCATGTTTTCCATCAGAAATCATAAACTCAGACAAAATTCAAGTGTACCAAGGTCTCGACATAGTCACAAACAAAATCCCAAAGGAAGACCAACGTGGGGTGCACCACCACTTACTGGGAACAATAAACCCCGACACAGACTTCACACCCACTGATTTCATTGACACGTCATCATCGGCCATTGACACCATCACCACAGCCCAGAAGCTTCCAATCATCGTTGGCGGCTCCAACTCCTATCTCGAGGCCTTGATCGACGACGACGATTACAAGTTCCGGTCGCGCTACGATTTTCTCTGCATCTGGGTTGACGTGGCAATGCCCGTGCTTCAATCCTACGTGGCGGAACGGGTCGACGACATGTTCCGTAAGGGAATGATGGAGGAGCTGCGACCCTTTTACAGTCCCGACGGGGATTACTCGAGAGGGATTAGAAGAGCCATTGGGGTTCCTGAATTTGACGAGTATTTTCGGAGGGAGGAGTTTGTGGACGAGGAAACAAAGCAGAGGTTGTTGGAAGATGCGATCAGGGAAATAAAATTGAACACGTGGAAACTTGCCATGAAACAGTTGGGGAAGATTCACAGGCTGAGGAACGTTAAGAGATGGGAGATTCATCGCTTGGACGCCACGCCCGTGTTTCGAAGGCGTGGGGAAGAAGCCAACGAGGCCTGGAAGAAGGTGGTGGCCGAACCGACTGCTATGGTCGTTGCGCGCTTTCTCTATAACTCCAAAAACAATGCTAACGTTGTTTCTGGACTTACACTGTTGCCACCTTCCGAGAATGTTATGGCTGCGGCAACGTGCTAG 969 0.4923 MTISMFMCKLRQPMINIPCSGKKLNVRQIEKEKVVVVMGATGAGKSRLSIDIASCFPSEIINSDKIQVYQGLDIVTNKIPKEDQRGVHHHLLGTINPDTDFTPTDFIDTSSSAIDTITTAQKLPIIVGGSNSYLEALIDDDDYKFRSRYDFLCIWVDVAMPVLQSYVAERVDDMFRKGMMEELRPFYSPDGDYSRGIRRAIGVPEFDEYFRREEFVDEETKQRLLEDAIREIKLNTWKLAMKQLGKIHRLRNVKRWEIHRLDATPVFRRRGEEANEAWKKVVAEPTAMVVARFLYNSKNNANVVSGLTLLPPSENVMAAATC 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2055g00007 322 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
Vium2055g00007 322 FunFam Adenylate isopentenyltransferase 5, chloroplastic 160 258 - -
Vium2055g00007 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 189 IPR027417 -
Vium2055g00007 322 Gene3D - 31 294 IPR027417 -
Vium2055g00007 322 Pfam IPP transferase 145 244 - -
Vium2055g00007 322 Pfam IPP transferase 67 140 - -
Vium2055g00007 322 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 293 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2055g00007 Vium-Chr2055 30101 31450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2055g00007 147 294 C2H2 Transcription Factor Family AT2G27760 30.857 2.44e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2055g00007 K10760 - gmx:100803964 503.056