Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2054g00002 ATGCCTTGCTCAATCTCTCTCTCACCCATCTCTCTCTTCTCTCTCCGCACAACCACCAGTACCTCTCCCTCTCTCTATCCTTCTCCCAAACACTATCGCCTCGCCGTCAAATCCTCCGTTGACAAACCCCCCGATGCCAGCACCAAGTCCGGTTCCTGGGTCAGCCCCGACTGGCTCACTTCCCTCACTCGCTCCCTCACCGCCGGGAACGACGACTCCGGCATCCCTGTCGCCACCGCCAAGCTCGATGACGTCTCCGACCTCCTCGGCGGCGCGCTCTTCCTCCCTCTCTTCAAGTGGATGCAGGACTATGGCCCCATTTACCGCCTCGCCGCTGGCCCCAGAAACTTCGTCGTCGTTAGTGACCCCGCCATTGCCAAACACGTGCTCAGGAACTACGGGAAATATTCTAAGGGCCTCGTTGCTGAGGTCTCCGAATTTCTCTTCGGGTCTGGTTTCGCAATTGCCGAAGGCCCGCTCTGGATGGCAAGGCGCAGGGCTGTGGTTCCATCTCTTCATAAACGATATTTGTCTATTATAGTGGATAGGGTATTTTGTAGATGTGCTGAGAGATTAGTGGAGAAGCTACAATCTGATGCACTCGATGGAACTGCTGTTAACATGGAGGAGAAGTTTTCACAGTTGACTCTGGATGTTATTGGTTTATCTGTATTTAACTATAACTTTGACGCACTAAGTGCAGACAGTCCTGTTATTGAGGCTGTTTACACAGCATTGAAAGAGGCAGAGGCTCGATCAACTGATCTTTTACCATATTGGAAGTTTAAATTTCTTTGTAAGTTAATTCCAAGACAAATAAAGGCTGAAGAGGCTGTTAGCGTTATCAGGAAAACTGTTGAGGATCTCATTGAAAGATGTAAGGAAATTGTAGAATCTGAGGGGGAAAGAATTGATGTTGAGGAATATGTAAATGATACTGACCCTAGTATTCTTCGGTTCTTGCTTGCCAGCAGAGAAGAGGTTTCCAGTGTACAATTAAGGGATGATCTTTTGTCACTTTTAGTTGCTGGTCATGAGACCACTGGTTCAGTGCTGACCTGGACACTTTATCTTCTAAGCAAGGATTCTTCCTCATTGGCAAAAGCACAAGAAGAGGTAGACAGAGTTTTACAGGGAAGGCGTCCTGCCTACGAAGATATTAAAAATCTGAAGTTCTTGACACACTGTATTATTGAGTCACTCCGTCTCTATCCACATCCCCCGGTGTTGATAAGAAGAGCTCAAGTTCCTGATGAGCTTCCAGGTTCTTATAAAGTCAATGCTGGTCAAGATATTATGATTTCTGTATACAATATACATCGTTCTTCTGAGGTTTGGGATAGGGCTGAAGAGTTTATGCCAGAAAGATTTGATTTGGATGGTCCGGTGCCAAATGAAACAAATACAGACTTCAGATTCATTCCATTCAGTGGAGGGCCCCGCAAGTGTGTTGGTGATCAGTTTGCTTTATTGGAAGCTATAGTTGCTCTTGCAATCTTTATACAGCACATGAACTTCGAACTGGTTCCTAATCAGAATATCAGTATGACTACAGGAGCAACAATACACACAACAAATGGCCTGTACATGAAAGTGAGCCAACGGTTGAAATAG 1614 0.4616 MPCSISLSPISLFSLRTTTSTSPSLYPSPKHYRLAVKSSVDKPPDASTKSGSWVSPDWLTSLTRSLTAGNDDSGIPVATAKLDDVSDLLGGALFLPLFKWMQDYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGKYSKGLVAEVSEFLFGSGFAIAEGPLWMARRRAVVPSLHKRYLSIIVDRVFCRCAERLVEKLQSDALDGTAVNMEEKFSQLTLDVIGLSVFNYNFDALSADSPVIEAVYTALKEAEARSTDLLPYWKFKFLCKLIPRQIKAEEAVSVIRKTVEDLIERCKEIVESEGERIDVEEYVNDTDPSILRFLLASREEVSSVQLRDDLLSLLVAGHETTGSVLTWTLYLLSKDSSSLAKAQEEVDRVLQGRRPAYEDIKNLKFLTHCIIESLRLYPHPPVLIRRAQVPDELPGSYKVNAGQDIMISVYNIHRSSEVWDRAEEFMPERFDLDGPVPNETNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIFIQHMNFELVPNQNISMTTGATIHTTNGLYMKVSQRLK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2054g00002 537 CDD CYP97 95 529 - -
Vium2054g00002 537 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 476 485 IPR017972 GO:0005506|GO:0016705
Vium2054g00002 537 SUPERFAMILY Cytochrome P450 89 535 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 PRINTS P450 superfamily signature 343 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 PRINTS P450 superfamily signature 395 406 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 PRINTS P450 superfamily signature 483 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 PRINTS P450 superfamily signature 474 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 Gene3D Cytochrome P450 76 537 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 Pfam Cytochrome P450 97 519 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 PANTHER CYTOCHROME P450 FAMILY 4 98 535 - -
Vium2054g00002 537 PRINTS E-class P450 group I signature 435 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 PRINTS E-class P450 group I signature 473 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 PRINTS E-class P450 group I signature 483 506 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 PRINTS E-class P450 group I signature 101 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 PRINTS E-class P450 group I signature 352 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2054g00002 537 PRINTS E-class P450 group I signature 332 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2054g00002 Vium-Chr2054 62966 70748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2054g00002 25 535 Cytochrome P450 AT3G53130 81.008 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2054g00002 K09837 - gmx:100803324 947.577